Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YVA entry

There are 2 chains in PDB entry 6YVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1SER 309
C
 MET 1GLY 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6YVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 73Right-handed alpha
Helix 2
AA2
A
78 91Right-handed alpha
Helix 3
AA3
A
110 121Right-handed alpha
Helix 4
AA4
A
129 141Right-handed alpha
Helix 5
AA5
A
144 155Right-handed alpha
Helix 6
AA6
A
164 175Right-handed alpha
Helix 7
AA7
A
202 205Right-handed 310
Helix 8
AA8
C
24 37Right-handed alpha
Helix 9
AA9
C
39 41Right-handed 310
Helix 10
AB1
C
101 114Right-handed alpha
Helix 11
AB2
C
116 120Right-handed 310
Helix 12
AB3
C
135 139Right-handed 310
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There are 6 sheets in PDB entry 6YVA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
5 10anti-parallel
Strand 3
A
54 56parallel
Strand 4
A
35 36anti-parallel
Strand 5
A
39 40anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
101 102anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
182 183anti-parallel
Strand 3
A
237 238anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 253first strand
Strand 2
A
296 306anti-parallel
Strand 3
A
260 266anti-parallel
Strand 4
A
271 277anti-parallel
Strand 5
A
283 286anti-parallel
Strand 6
A
289 291anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 20first strand
Strand 2
C
2 8anti-parallel
Strand 3
C
68 73parallel
Strand 4
C
43 46anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
91 96first strand
Strand 2
C
80 85anti-parallel
Strand 3
C
145 149parallel
Strand 4
C
121 124anti-parallel
Strand 5
C
127 128anti-parallel
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