Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YVD entry

There are 4 chains in PDB entry 6YVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 495ALA 748
A
 ASP 8SER 911
C
 MET 1MET 1170
D
 GLN 150LEU 1415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 6YVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
505 511Right-handed alpha
Helix 2
AA2
B
648 660Right-handed alpha
Helix 3
AA3
B
693 700Right-handed alpha
Helix 4
AA4
B
704 709Right-handed 310
Helix 5
AA5
B
712 715Right-handed 310
Helix 6
AA6
B
716 722Right-handed alpha
Helix 7
AA7
B
722 727Right-handed alpha
Helix 8
AA8
A
9 27Right-handed alpha
Helix 9
AA9
A
30 48Right-handed alpha
Helix 10
AB1
A
50 65Right-handed alpha
Helix 11
AB2
A
72 100Right-handed alpha
Helix 12
AB3
A
106 123Right-handed alpha
Helix 13
AB4
A
124 126Right-handed 310
Helix 14
AB5
A
130 144Right-handed alpha
Helix 15
AB6
A
152 167Right-handed alpha
Helix 16
AB7
A
171 184Right-handed alpha
Helix 17
AB8
A
206 217Right-handed alpha
Helix 18
AB9
A
219 230Right-handed alpha
Helix 19
AC1
A
236 242Right-handed alpha
Helix 20
AC2
A
243 246Right-handed 310
Helix 21
AC3
A
248 258Right-handed alpha
Helix 22
AC4
A
258 264Right-handed alpha
Helix 23
AC5
A
265 269Right-handed 310
Helix 24
AC6
A
272 285Right-handed alpha
Helix 25
AC7
A
288 301Right-handed alpha
Helix 26
AC8
A
301 307Right-handed alpha
Helix 27
AC9
A
310 319Right-handed alpha
Helix 28
AD1
A
325 337Right-handed alpha
Helix 29
AD2
A
338 344Right-handed alpha
Helix 30
AD3
A
348 352Right-handed 310
Helix 31
AD4
A
355 373Right-handed alpha
Helix 32
AD5
A
375 380Right-handed alpha
Helix 33
AD6
A
384 400Right-handed alpha
Helix 34
AD7
A
415 431Right-handed alpha
Helix 35
AD8
A
436 453Right-handed alpha
Helix 36
AD9
A
457 472Right-handed alpha
Helix 37
AE1
A
474 506Right-handed alpha
Helix 38
AE2
A
571 589Right-handed alpha
Helix 39
AE3
A
596 606Right-handed alpha
Helix 40
AE4
A
606 613Right-handed alpha
Helix 41
AE5
A
615 633Right-handed alpha
Helix 42
AE6
A
633 640Right-handed alpha
Helix 43
AE7
A
640 651Right-handed alpha
Helix 44
AE8
A
652 670Right-handed alpha
Helix 45
AE9
A
682 696Right-handed alpha
Helix 46
AF1
A
699 716Right-handed alpha
Helix 47
AF2
A
721 734Right-handed alpha
Helix 48
AF3
A
735 739Right-handed 310
Helix 49
AF4
A
740 758Right-handed alpha
Helix 50
AF5
A
758 783Right-handed alpha
Helix 51
AF6
A
798 811Right-handed alpha
Helix 52
AF7
A
826 839Right-handed alpha
Helix 53
AF8
A
844 854Right-handed alpha
Helix 54
AF9
A
865 879Right-handed alpha
Helix 55
AG1
A
888 911Right-handed alpha
Helix 56
AG2
C
36 46Right-handed alpha
Helix 57
AG3
C
59 63Right-handed 310
Helix 58
AG4
C
87 91Right-handed 310
Helix 59
AG5
C
123 134Right-handed alpha
Helix 60
AG6
C
148 155Right-handed alpha
Helix 61
AG7
C
159 168Right-handed alpha
Helix 62
AG8
C
177 237Right-handed alpha
Helix 63
AG9
C
963 979Right-handed alpha
Helix 64
AH1
C
983 1013Right-handed alpha
Helix 65
AH2
C
1024 1048Right-handed alpha
Helix 66
AH3
C
1085 1097Right-handed alpha
Helix 67
AH4
C
1098 1101Right-handed 310
Helix 68
AH5
C
1119 1133Right-handed alpha
Helix 69
AH6
D
190 202Right-handed alpha
Helix 70
AH7
D
278 288Right-handed alpha
Helix 71
AH8
D
303 311Right-handed alpha
Helix 72
AH9
D
314 318Right-handed 310
Helix 73
AI1
D
322 332Right-handed alpha
Helix 74
AI2
D
336 371Right-handed alpha
Helix 75
AI3
D
1225 1287Right-handed alpha
Helix 76
AI4
D
1325 1338Right-handed alpha
Helix 77
AI5
D
1338 1343Right-handed alpha
Helix 78
AI6
D
1358 1364Right-handed alpha
Helix 79
AI7
D
1364 1372Right-handed alpha
Helix 80
AI8
D
1384 1390Right-handed alpha
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There are 9 sheets in PDB entry 6YVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
17 21anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 29first strand
Strand 2
C
1140 1141parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 80first strand
Strand 2
C
104 106anti-parallel
Strand 3
C
114 117anti-parallel
Strand 4
C
120 122anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
83 84first strand
Strand 2
C
100 101anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1052 1056first strand
Strand 2
C
1068 1073anti-parallel
Strand 3
C
1076 1077anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 173first strand
Strand 2
D
153 161anti-parallel
Strand 3
D
234 239anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
229 232first strand
Strand 2
D
259 263anti-parallel
Strand 3
D
268 271anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1291 1295first strand
Strand 2
D
1306 1310anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1398 1399first strand
Strand 2
D
1404 1405anti-parallel
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