Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YVH entry

There are 7 chains in PDB entry 6YVH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 130	LEU 406
B	GLY 130	LEU 406
C	GLY 378	PHE 426
D	GLY 130	LEU 406
F	ALA 132	LEU 406
H	LEU 246	ILE 411
J	LEU 246	VAL 258

There are 91 helices in PDB entry 6YVH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	141	Right-handed alpha
Helix 2	AA2	A	151	173	Right-handed alpha
Helix 3	AA3	A	177	188	Right-handed alpha
Helix 4	AA4	A	193	208	Right-handed alpha
Helix 5	AA5	A	211	226	Right-handed alpha
Helix 6	AA6	A	226	248	Right-handed alpha
Helix 7	AA7	A	249	266	Right-handed alpha
Helix 8	AA8	A	271	284	Right-handed alpha
Helix 9	AA9	A	286	308	Right-handed alpha
Helix 10	AB1	A	308	326	Right-handed alpha
Helix 11	AB2	A	329	346	Right-handed alpha
Helix 12	AB3	A	361	365	Right-handed 310
Helix 13	AB4	A	379	384	Right-handed 310
Helix 14	AB5	A	390	403	Right-handed alpha
Helix 15	AB6	B	136	141	Right-handed alpha
Helix 16	AB7	B	151	173	Right-handed alpha
Helix 17	AB8	B	177	187	Right-handed alpha
Helix 18	AB9	B	193	208	Right-handed alpha
Helix 19	AC1	B	211	226	Right-handed alpha
Helix 20	AC2	B	226	248	Right-handed alpha
Helix 21	AC3	B	249	266	Right-handed alpha
Helix 22	AC4	B	271	284	Right-handed alpha
Helix 23	AC5	B	286	308	Right-handed alpha
Helix 24	AC6	B	308	326	Right-handed alpha
Helix 25	AC7	B	329	346	Right-handed alpha
Helix 26	AC8	B	361	365	Right-handed 310
Helix 27	AC9	B	379	384	Right-handed 310
Helix 28	AD1	B	390	406	Right-handed alpha
Helix 29	AD2	C	379	403	Right-handed alpha
Helix 30	AD3	D	135	141	Right-handed alpha
Helix 31	AD4	D	151	173	Right-handed alpha
Helix 32	AD5	D	177	187	Right-handed alpha
Helix 33	AD6	D	193	208	Right-handed alpha
Helix 34	AD7	D	211	226	Right-handed alpha
Helix 35	AD8	D	226	248	Right-handed alpha
Helix 36	AD9	D	249	266	Right-handed alpha
Helix 37	AE1	D	271	284	Right-handed alpha
Helix 38	AE2	D	286	308	Right-handed alpha
Helix 39	AE3	D	308	326	Right-handed alpha
Helix 40	AE4	D	329	346	Right-handed alpha
Helix 41	AE5	D	361	365	Right-handed 310
Helix 42	AE6	D	379	384	Right-handed 310
Helix 43	AE7	D	390	403	Right-handed alpha
Helix 44	AE8	F	135	141	Right-handed alpha
Helix 45	AE9	F	153	173	Right-handed alpha
Helix 46	AF1	F	177	188	Right-handed alpha
Helix 47	AF2	F	193	208	Right-handed alpha
Helix 48	AF3	F	211	226	Right-handed alpha
Helix 49	AF4	F	226	247	Right-handed alpha
Helix 50	AF5	F	249	266	Right-handed alpha
Helix 51	AF6	F	271	284	Right-handed alpha
Helix 52	AF7	F	286	308	Right-handed alpha
Helix 53	AF8	F	308	326	Right-handed alpha
Helix 54	AF9	F	329	346	Right-handed alpha
Helix 55	AG1	F	361	365	Right-handed 310
Helix 56	AG2	F	379	384	Right-handed 310
Helix 57	AG3	F	390	406	Right-handed alpha
Helix 58	AG4	H	261	275	Right-handed alpha
Helix 59	AG5	H	286	300	Right-handed alpha
Helix 60	AG6	H	314	325	Right-handed alpha
Helix 61	AG7	H	357	359	Right-handed 310
Helix 62	AG8	H	360	366	Right-handed alpha
Helix 63	AG9	H	385	396	Right-handed alpha
Helix 64	AH1	H	404	410	Right-handed 310
Helix 65	AH2	J	261	275	Right-handed alpha
Helix 66	AH3	J	286	300	Right-handed alpha
Helix 67	AH4	J	314	325	Right-handed alpha
Helix 68	AH5	J	357	359	Right-handed 310
Helix 69	AH6	J	360	366	Right-handed alpha
Helix 70	AH7	J	385	396	Right-handed alpha
Helix 71	AH8	J	404	410	Right-handed 310
Helix 72	AH9	K	260	262	Right-handed 310
Helix 73	AI1	K	263	275	Right-handed alpha
Helix 74	AI2	K	286	300	Right-handed alpha
Helix 75	AI3	K	314	325	Right-handed alpha
Helix 76	AI4	K	357	359	Right-handed 310
Helix 77	AI5	K	360	366	Right-handed alpha
Helix 78	AI6	K	385	396	Right-handed alpha
Helix 79	AI7	K	404	410	Right-handed 310
Helix 80	AI8	L	260	262	Right-handed 310
Helix 81	AI9	L	263	275	Right-handed alpha
Helix 82	AJ1	L	286	300	Right-handed alpha
Helix 83	AJ2	L	314	325	Right-handed alpha
Helix 84	AJ3	L	357	359	Right-handed 310
Helix 85	AJ4	L	360	366	Right-handed alpha
Helix 86	AJ5	L	385	396	Right-handed alpha
Helix 87	AJ6	L	404	410	Right-handed 310
Helix 88	AJ7	I	379	403	Right-handed alpha
Helix 89	AJ8	E	379	403	Right-handed alpha
Helix 90	AJ9	G	379	403	Right-handed alpha
Helix 91	AK1	G	418	422	Right-handed 310

There are 4 sheets in PDB entry 6YVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	304	307	first strand
Strand 2	H	330	333	parallel
Strand 3	H	279	283	parallel
Strand 4	H	346	351	parallel
Strand 5	H	376	382	parallel
Strand 6	H	252	259	parallel
Strand 7	H	401	402	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	304	307	first strand
Strand 2	J	330	333	parallel
Strand 3	J	279	283	parallel
Strand 4	J	346	351	parallel
Strand 5	J	376	382	parallel
Strand 6	J	252	259	parallel
Strand 7	J	401	402	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	304	307	first strand
Strand 2	K	330	333	parallel
Strand 3	K	279	283	parallel
Strand 4	K	346	351	parallel
Strand 5	K	376	382	parallel
Strand 6	K	252	259	parallel
Strand 7	K	401	402	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	304	307	first strand
Strand 2	L	330	333	parallel
Strand 3	L	279	283	parallel
Strand 4	L	346	351	parallel
Strand 5	L	376	382	parallel
Strand 6	L	252	259	parallel
Strand 7	L	401	402	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YVH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVH