Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YVU entry

There are 4 chains in PDB entry 6YVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	UNK 2949
B	GLN 151	ILE 1414
C	SER 25	UNK 2271
D	SER 5	UNK 1168

There are120 helices in PDB entry 6YVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	38	Right-handed 310
Helix 2	AA2	A	39	50	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed 310
Helix 4	AA4	A	67	71	Right-handed 310
Helix 5	AA5	A	125	131	Right-handed alpha
Helix 6	AA6	A	132	135	Right-handed 310
Helix 7	AA7	A	148	153	Right-handed 310
Helix 8	AA8	A	158	168	Right-handed alpha
Helix 9	AA9	A	171	291	Right-handed alpha
Helix 10	AB1	A	300	383	Right-handed alpha
Helix 11	AB2	A	398	469	Right-handed alpha
Helix 12	AB3	A	472	497	Right-handed alpha
Helix 13	AB4	A	499	503	Right-handed 310
Helix 14	AB5	A	519	523	Right-handed 310
Helix 15	AB6	A	535	539	Right-handed 310
Helix 16	AB7	A	540	549	Right-handed alpha
Helix 17	AB8	A	550	552	Right-handed 310
Helix 18	AB9	A	559	570	Right-handed alpha
Helix 19	AC1	A	590	601	Right-handed alpha
Helix 20	AC2	A	609	612	Right-handed 310
Helix 21	AC3	A	615	617	Right-handed 310
Helix 22	AC4	A	618	625	Right-handed alpha
Helix 23	AC5	A	634	643	Right-handed alpha
Helix 24	AC6	A	677	738	Right-handed alpha
Helix 25	AC7	A	739	785	Right-handed alpha
Helix 26	AC8	A	792	936	Right-handed alpha
Helix 27	AC9	A	963	978	Right-handed alpha
Helix 28	AD1	A	985	1048	Right-handed alpha
Helix 29	AD2	A	1080	1084	Right-handed 310
Helix 30	AD3	A	1085	1102	Right-handed alpha
Helix 31	AD4	A	1119	1134	Right-handed alpha
Helix 32	AD5	A	2943	2949	Right-handed alpha
Helix 33	AD6	B	190	203	Right-handed alpha
Helix 34	AD7	B	213	217	Right-handed 310
Helix 35	AD8	B	278	289	Right-handed alpha
Helix 36	AD9	B	301	310	Right-handed alpha
Helix 37	AE1	B	322	332	Right-handed alpha
Helix 38	AE2	B	336	362	Right-handed alpha
Helix 39	AE3	B	366	539	Right-handed alpha
Helix 40	AE4	B	543	558	Right-handed alpha
Helix 41	AE5	B	563	683	Right-handed alpha
Helix 42	AE6	B	699	701	Right-handed 310
Helix 43	AE7	B	702	710	Right-handed alpha
Helix 44	AE8	B	711	714	Right-handed 310
Helix 45	AE9	B	720	735	Right-handed alpha
Helix 46	AF1	B	763	768	Right-handed alpha
Helix 47	AF2	B	772	774	Right-handed 310
Helix 48	AF3	B	775	783	Right-handed alpha
Helix 49	AF4	B	792	796	Right-handed 310
Helix 50	AF5	B	847	927	Right-handed alpha
Helix 51	AF6	B	928	967	Right-handed alpha
Helix 52	AF7	B	973	1108	Right-handed alpha
Helix 53	AF8	B	1109	1114	Right-handed 310
Helix 54	AF9	B	1160	1169	Right-handed alpha
Helix 55	AG1	B	1193	1197	Right-handed 310
Helix 56	AG2	B	1200	1219	Right-handed alpha
Helix 57	AG3	B	1222	1231	Right-handed alpha
Helix 58	AG4	B	1233	1287	Right-handed alpha
Helix 59	AG5	B	1321	1323	Right-handed 310
Helix 60	AG6	B	1324	1343	Right-handed alpha
Helix 61	AG7	B	1358	1370	Right-handed alpha
Helix 62	AG8	B	1384	1389	Right-handed alpha
Helix 63	AG9	C	26	39	Right-handed alpha
Helix 64	AH1	C	53	59	Right-handed alpha
Helix 65	AH2	C	71	107	Right-handed alpha
Helix 66	AH3	C	185	195	Right-handed alpha
Helix 67	AH4	C	646	658	Right-handed alpha
Helix 68	AH5	C	692	702	Right-handed alpha
Helix 69	AH6	C	712	727	Right-handed alpha
Helix 70	AH7	D	6	13	Right-handed alpha
Helix 71	AH8	D	31	36	Right-handed alpha
Helix 72	AH9	D	49	60	Right-handed alpha
Helix 73	AI1	D	80	100	Right-handed alpha
Helix 74	AI2	D	104	126	Right-handed alpha
Helix 75	AI3	D	164	176	Right-handed alpha
Helix 76	AI4	D	188	204	Right-handed alpha
Helix 77	AI5	D	217	226	Right-handed alpha
Helix 78	AI6	D	232	247	Right-handed alpha
Helix 79	AI7	D	249	263	Right-handed alpha
Helix 80	AI8	D	267	281	Right-handed alpha
Helix 81	AI9	D	289	305	Right-handed alpha
Helix 82	AJ1	D	305	310	Right-handed alpha
Helix 83	AJ2	D	311	315	Right-handed 310
Helix 84	AJ3	D	316	321	Right-handed alpha
Helix 85	AJ4	D	324	345	Right-handed alpha
Helix 86	AJ5	D	349	367	Right-handed alpha
Helix 87	AJ6	D	371	387	Right-handed alpha
Helix 88	AJ7	D	392	406	Right-handed alpha
Helix 89	AJ8	D	412	428	Right-handed alpha
Helix 90	AJ9	D	440	456	Right-handed alpha
Helix 91	AK1	D	518	552	Right-handed alpha
Helix 92	AK2	D	556	572	Right-handed alpha
Helix 93	AK3	D	576	589	Right-handed alpha
Helix 94	AK4	D	601	612	Right-handed alpha
Helix 95	AK5	D	620	637	Right-handed alpha
Helix 96	AK6	D	640	655	Right-handed alpha
Helix 97	AK7	D	661	675	Right-handed alpha
Helix 98	AK8	D	698	714	Right-handed alpha
Helix 99	AK9	D	714	720	Right-handed alpha
Helix 100	AL1	D	721	728	Right-handed alpha
Helix 101	AL2	D	731	736	Right-handed 310
Helix 102	AL3	D	737	750	Right-handed alpha
Helix 103	AL4	D	770	779	Right-handed alpha
Helix 104	AL5	D	788	802	Right-handed alpha
Helix 105	AL6	D	805	818	Right-handed alpha
Helix 106	AL7	D	841	871	Right-handed alpha
Helix 107	AL8	D	955	966	Right-handed alpha
Helix 108	AL9	D	967	969	Right-handed 310
Helix 109	AM1	D	971	987	Right-handed alpha
Helix 110	AM2	D	990	1004	Right-handed alpha
Helix 111	AM3	D	1018	1024	Right-handed 310
Helix 112	AM4	D	1027	1042	Right-handed alpha
Helix 113	AM5	D	1053	1059	Right-handed alpha
Helix 114	AM6	D	1060	1062	Right-handed 310
Helix 115	AM7	D	1064	1078	Right-handed alpha
Helix 116	AM8	D	1089	1100	Right-handed alpha
Helix 117	AM9	D	1108	1117	Right-handed alpha
Helix 118	AN1	D	1125	1134	Right-handed alpha
Helix 119	AN2	D	1137	1147	Right-handed alpha
Helix 120	AN3	D	1161	1168	Right-handed alpha

There are 14 sheets in PDB entry 6YVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	100	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	1161	1162	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	1154	1156	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	120	122	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	526	first strand
Strand 2	A	554	557	anti-parallel
Strand 3	A	576	580	parallel
Strand 4	B	821	823	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	607	first strand
Strand 2	A	630	631	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	651	653	first strand
Strand 2	A	657	659	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	665	668	first strand
Strand 2	B	738	743	anti-parallel
Strand 3	B	716	718	parallel
Strand 4	B	688	691	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1108	1111	first strand
Strand 2	A	1138	1141	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	152	162	anti-parallel
Strand 3	B	230	240	anti-parallel
Strand 4	B	256	262	anti-parallel
Strand 5	B	268	272	anti-parallel
Strand 6	B	275	277	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1347	1349	first strand
Strand 2	B	1377	1381	parallel
Strand 3	B	180	184	parallel
Strand 4	B	1395	1400	parallel
Strand 5	B	1403	1408	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	789	first strand
Strand 2	B	806	809	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1290	1295	first strand
Strand 2	B	1306	1311	anti-parallel
Strand 3	B	1318	1319	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	690	691	first strand
Strand 2	C	740	744	anti-parallel
Strand 3	C	729	733	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVU