Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YVV entry

There are 4 chains in PDB entry 6YVV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	UNK 2949
B	GLN 151	ASP 1413
C	SER 25	UNK 2271
D	SER 5	UNK 1168

There are 86 helices in PDB entry 6YVV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	66	71	Right-handed 310
Helix 3	AA3	A	123	134	Right-handed alpha
Helix 4	AA4	A	149	154	Right-handed alpha
Helix 5	AA5	A	158	171	Right-handed alpha
Helix 6	AA6	A	172	242	Right-handed alpha
Helix 7	AA7	A	930	937	Right-handed alpha
Helix 8	AA8	A	963	979	Right-handed alpha
Helix 9	AA9	A	985	1048	Right-handed alpha
Helix 10	AB1	A	1080	1084	Right-handed 310
Helix 11	AB2	A	1085	1101	Right-handed alpha
Helix 12	AB3	A	1119	1133	Right-handed alpha
Helix 13	AB4	A	2943	2949	Right-handed alpha
Helix 14	AB5	B	190	202	Right-handed alpha
Helix 15	AB6	B	213	218	Right-handed 310
Helix 16	AB7	B	278	289	Right-handed alpha
Helix 17	AB8	B	301	310	Right-handed alpha
Helix 18	AB9	B	322	332	Right-handed alpha
Helix 19	AC1	B	333	335	Right-handed 310
Helix 20	AC2	B	336	403	Right-handed alpha
Helix 21	AC3	B	1161	1167	Right-handed alpha
Helix 22	AC4	B	1192	1198	Right-handed alpha
Helix 23	AC5	B	1200	1216	Right-handed alpha
Helix 24	AC6	B	1230	1286	Right-handed alpha
Helix 25	AC7	B	1324	1343	Right-handed alpha
Helix 26	AC8	B	1358	1372	Right-handed alpha
Helix 27	AC9	C	26	40	Right-handed alpha
Helix 28	AD1	C	53	59	Right-handed alpha
Helix 29	AD2	C	71	105	Right-handed alpha
Helix 30	AD3	C	185	195	Right-handed alpha
Helix 31	AD4	C	646	659	Right-handed alpha
Helix 32	AD5	C	693	701	Right-handed alpha
Helix 33	AD6	C	704	711	Right-handed alpha
Helix 34	AD7	C	712	727	Right-handed alpha
Helix 35	AD8	D	6	13	Right-handed alpha
Helix 36	AD9	D	31	36	Right-handed alpha
Helix 37	AE1	D	49	60	Right-handed alpha
Helix 38	AE2	D	80	100	Right-handed alpha
Helix 39	AE3	D	104	126	Right-handed alpha
Helix 40	AE4	D	164	176	Right-handed alpha
Helix 41	AE5	D	188	204	Right-handed alpha
Helix 42	AE6	D	217	225	Right-handed alpha
Helix 43	AE7	D	232	247	Right-handed alpha
Helix 44	AE8	D	250	263	Right-handed alpha
Helix 45	AE9	D	267	281	Right-handed alpha
Helix 46	AF1	D	289	305	Right-handed alpha
Helix 47	AF2	D	307	311	Right-handed 310
Helix 48	AF3	D	315	322	Right-handed 310
Helix 49	AF4	D	325	345	Right-handed alpha
Helix 50	AF5	D	349	367	Right-handed alpha
Helix 51	AF6	D	371	387	Right-handed alpha
Helix 52	AF7	D	392	404	Right-handed alpha
Helix 53	AF8	D	412	428	Right-handed alpha
Helix 54	AF9	D	440	457	Right-handed alpha
Helix 55	AG1	D	518	552	Right-handed alpha
Helix 56	AG2	D	556	562	Right-handed alpha
Helix 57	AG3	D	562	572	Right-handed alpha
Helix 58	AG4	D	576	589	Right-handed alpha
Helix 59	AG5	D	601	612	Right-handed alpha
Helix 60	AG6	D	620	637	Right-handed alpha
Helix 61	AG7	D	640	653	Right-handed alpha
Helix 62	AG8	D	661	675	Right-handed alpha
Helix 63	AG9	D	699	711	Right-handed alpha
Helix 64	AH1	D	715	720	Right-handed alpha
Helix 65	AH2	D	721	730	Right-handed alpha
Helix 66	AH3	D	731	736	Right-handed 310
Helix 67	AH4	D	737	750	Right-handed alpha
Helix 68	AH5	D	770	779	Right-handed alpha
Helix 69	AH6	D	788	802	Right-handed alpha
Helix 70	AH7	D	805	818	Right-handed alpha
Helix 71	AH8	D	841	871	Right-handed alpha
Helix 72	AH9	D	956	966	Right-handed alpha
Helix 73	AI1	D	967	969	Right-handed 310
Helix 74	AI2	D	971	987	Right-handed alpha
Helix 75	AI3	D	990	1004	Right-handed alpha
Helix 76	AI4	D	1018	1023	Right-handed 310
Helix 77	AI5	D	1027	1042	Right-handed alpha
Helix 78	AI6	D	1054	1059	Right-handed alpha
Helix 79	AI7	D	1060	1062	Right-handed 310
Helix 80	AI8	D	1064	1078	Right-handed alpha
Helix 81	AI9	D	1089	1100	Right-handed alpha
Helix 82	AJ1	D	1101	1103	Right-handed 310
Helix 83	AJ2	D	1108	1117	Right-handed alpha
Helix 84	AJ3	D	1125	1134	Right-handed alpha
Helix 85	AJ4	D	1137	1147	Right-handed alpha
Helix 86	AJ5	D	1161	1168	Right-handed alpha

There are 10 sheets in PDB entry 6YVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1108	1112	first strand
Strand 2	A	1138	1142	parallel
Strand 3	A	28	31	parallel
Strand 4	A	1155	1157	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	84	first strand
Strand 2	A	100	107	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1054	1057	first strand
Strand 2	A	1067	1073	anti-parallel
Strand 3	A	1076	1078	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1159	1161	first strand
Strand 2	A	1164	1166	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	153	162	anti-parallel
Strand 3	B	231	239	anti-parallel
Strand 4	B	256	263	anti-parallel
Strand 5	B	267	272	anti-parallel
Strand 6	B	275	277	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	184	first strand
Strand 2	B	1394	1400	parallel
Strand 3	B	1403	1409	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	1349	1350	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1290	1295	first strand
Strand 2	B	1306	1311	anti-parallel
Strand 3	B	1318	1319	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	210	first strand
Strand 2	C	216	217	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	729	733	first strand
Strand 2	C	740	744	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YVV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVV