Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YVX entry

There is 1 chain in PDB entry 6YVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 182LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6YVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 197Right-handed alpha
Helix 2
AA2
A
197 206Right-handed alpha
Helix 3
AA3
A
215 232Right-handed alpha
Helix 4
AA4
A
246 250Right-handed 310
Helix 5
AA5
A
266 283Right-handed alpha
Helix 6
AA6
A
335 340Right-handed alpha
Helix 7
AA7
A
393 404Right-handed alpha
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There are 4 sheets in PDB entry 6YVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
207 211parallel
Strand 3
A
362 367anti-parallel
Strand 4
A
322 329anti-parallel
Strand 5
A
383 392anti-parallel
Strand 6
A
298 303anti-parallel
Strand 7
A
255 259anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
207 211parallel
Strand 3
A
362 367anti-parallel
Strand 4
A
322 329anti-parallel
Strand 5
A
383 392anti-parallel
Strand 6
A
292 295anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
251 252anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
374 376anti-parallel
Strand 3
A
343 345anti-parallel
Strand 4
A
354 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il