Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YVY entry

There are 4 chains in PDB entry 6YVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 412	GLN 686
B	TYR 415	GLN 686
C	SER 411	GLN 686
D	TYR 415	GLN 686

There are 53 helices in PDB entry 6YVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	418	420	Right-handed 310
Helix 2	AA2	A	461	477	Right-handed alpha
Helix 3	AA3	A	507	514	Right-handed alpha
Helix 4	AA4	A	519	540	Right-handed alpha
Helix 5	AA5	A	548	550	Right-handed 310
Helix 6	AA6	A	585	589	Right-handed 310
Helix 7	AA7	A	590	597	Right-handed alpha
Helix 8	AA8	A	600	617	Right-handed alpha
Helix 9	AA9	A	627	629	Right-handed 310
Helix 10	AB1	A	630	637	Right-handed alpha
Helix 11	AB2	A	648	659	Right-handed alpha
Helix 12	AB3	A	662	666	Right-handed 310
Helix 13	AB4	A	668	685	Right-handed alpha
Helix 14	AB5	B	418	420	Right-handed 310
Helix 15	AB6	B	461	477	Right-handed alpha
Helix 16	AB7	B	507	515	Right-handed alpha
Helix 17	AB8	B	516	518	Right-handed 310
Helix 18	AB9	B	519	540	Right-handed alpha
Helix 19	AC1	B	548	550	Right-handed 310
Helix 20	AC2	B	585	589	Right-handed 310
Helix 21	AC3	B	590	597	Right-handed alpha
Helix 22	AC4	B	600	617	Right-handed alpha
Helix 23	AC5	B	627	629	Right-handed 310
Helix 24	AC6	B	630	637	Right-handed alpha
Helix 25	AC7	B	648	659	Right-handed alpha
Helix 26	AC8	B	662	666	Right-handed 310
Helix 27	AC9	B	668	685	Right-handed alpha
Helix 28	AD1	C	418	420	Right-handed 310
Helix 29	AD2	C	461	477	Right-handed alpha
Helix 30	AD3	C	507	515	Right-handed alpha
Helix 31	AD4	C	516	518	Right-handed 310
Helix 32	AD5	C	519	540	Right-handed alpha
Helix 33	AD6	C	548	550	Right-handed 310
Helix 34	AD7	C	585	589	Right-handed 310
Helix 35	AD8	C	590	597	Right-handed alpha
Helix 36	AD9	C	600	617	Right-handed alpha
Helix 37	AE1	C	627	629	Right-handed 310
Helix 38	AE2	C	630	637	Right-handed alpha
Helix 39	AE3	C	648	659	Right-handed alpha
Helix 40	AE4	C	662	666	Right-handed 310
Helix 41	AE5	C	668	685	Right-handed alpha
Helix 42	AE6	D	418	420	Right-handed 310
Helix 43	AE7	D	461	477	Right-handed alpha
Helix 44	AE8	D	506	514	Right-handed alpha
Helix 45	AE9	D	519	540	Right-handed alpha
Helix 46	AF1	D	548	550	Right-handed 310
Helix 47	AF2	D	585	589	Right-handed 310
Helix 48	AF3	D	590	597	Right-handed alpha
Helix 49	AF4	D	600	617	Right-handed alpha
Helix 50	AF5	D	627	637	Right-handed alpha
Helix 51	AF6	D	648	659	Right-handed alpha
Helix 52	AF7	D	662	666	Right-handed 310
Helix 53	AF8	D	668	685	Right-handed alpha

There are 9 sheets in PDB entry 6YVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	430	first strand
Strand 2	A	435	441	anti-parallel
Strand 3	A	449	455	anti-parallel
Strand 4	A	496	500	anti-parallel
Strand 5	A	486	490	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	506	first strand
Strand 2	A	552	556	anti-parallel
Strand 3	A	559	562	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	569	570	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	430	first strand
Strand 2	B	435	441	anti-parallel
Strand 3	B	449	455	anti-parallel
Strand 4	B	496	500	anti-parallel
Strand 5	B	486	490	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	552	556	anti-parallel
Strand 3	B	559	562	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	430	first strand
Strand 2	C	435	441	anti-parallel
Strand 3	C	449	455	anti-parallel
Strand 4	C	496	500	anti-parallel
Strand 5	C	486	490	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	552	556	anti-parallel
Strand 3	C	559	562	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	430	first strand
Strand 2	D	435	441	anti-parallel
Strand 3	D	449	454	anti-parallel
Strand 4	D	496	500	anti-parallel
Strand 5	D	486	490	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	556	first strand
Strand 2	D	559	562	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YVY