Analysis of interatomic Contacts of Structural Units in PDB entry:
6YW0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YW0 entry

There are 18 chains in PDB entry 6YW0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 188LEU 191
A
 LEU 193ASN 203
A
 HIS 205GLY 215
A
 GLU 217GLY 233
A
 PHE 235GLN 243
A
 SER 245SER 248
A
 ASP 250ASP 254
A
 ILE 256GLY 261
A
 GLU 263GLY 285
A
 LEU 287TYR 290
A
 ILE 292THR 296
A
 ALA 298ASN 331
A
 ASP 333ALA 336
A
 VAL 338GLY 349
A
 ALA 351PRO 358
A
 PHE 360ALA 399
A
 VAL 401VAL 401
A
 TYR 403LEU 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6YW0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 197Right-handed alpha
Helix 2
AA2
A
197 206Right-handed alpha
Helix 3
AA3
A
215 233Right-handed alpha
Helix 4
AA4
A
246 250Right-handed 310
Helix 5
AA5
A
266 283Right-handed alpha
Helix 6
AA6
A
335 340Right-handed alpha
Helix 7
AA7
A
393 400Right-handed alpha
Helix 8
AA8
A
401 404Right-handed 310
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There are 4 sheets in PDB entry 6YW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
298 303anti-parallel
Strand 6
A
255 259anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 211first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
322 329anti-parallel
Strand 4
A
383 392anti-parallel
Strand 5
A
292 295anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
251 252anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
374 376anti-parallel
Strand 3
A
343 345anti-parallel
Strand 4
A
354 356anti-parallel
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