Analysis of interatomic Contacts of Structural Units in PDB entry:
6YW6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YW6 entry

There are 7 chains in PDB entry 6YW6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 3	VAL 413
C	ALA 2	LYS 372
D	MET 1	ALA 284
E	SER 6	GLY 175
B	VAL 9	GLN 376
G	ARG 12	VAL 151
F	THR 4	PHE 168

There are 66 helices in PDB entry 6YW6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	69	Right-handed alpha
Helix 2	AA2	A	85	95	Right-handed alpha
Helix 3	AA3	A	121	133	Right-handed alpha
Helix 4	AA4	A	144	152	Right-handed alpha
Helix 5	AA5	A	153	155	Right-handed 310
Helix 6	AA6	A	197	212	Right-handed alpha
Helix 7	AA7	A	216	218	Right-handed 310
Helix 8	AA8	A	219	232	Right-handed alpha
Helix 9	AA9	A	240	248	Right-handed alpha
Helix 10	AB1	A	279	283	Right-handed 310
Helix 11	AB2	A	284	288	Right-handed 310
Helix 12	AB3	A	295	305	Right-handed alpha
Helix 13	AB4	A	311	316	Right-handed alpha
Helix 14	AB5	A	323	327	Right-handed 310
Helix 15	AB6	A	330	347	Right-handed alpha
Helix 16	AB7	A	347	354	Right-handed alpha
Helix 17	AB8	A	370	374	Right-handed 310
Helix 18	AB9	A	375	380	Right-handed alpha
Helix 19	AC1	A	389	394	Right-handed alpha
Helix 20	AC2	A	396	403	Right-handed alpha
Helix 21	AC3	A	404	410	Right-handed alpha
Helix 22	AC4	C	359	363	Right-handed alpha
Helix 23	AC5	D	13	24	Right-handed alpha
Helix 24	AC6	D	38	40	Right-handed 310
Helix 25	AC7	D	48	51	Right-handed 310
Helix 26	AC8	D	63	68	Right-handed alpha
Helix 27	AC9	D	69	71	Right-handed 310
Helix 28	AD1	D	72	80	Right-handed alpha
Helix 29	AD2	D	81	84	Right-handed 310
Helix 30	AD3	D	110	114	Right-handed 310
Helix 31	AD4	D	117	134	Right-handed alpha
Helix 32	AD5	D	172	187	Right-handed alpha
Helix 33	AD6	D	188	191	Right-handed 310
Helix 34	AD7	D	206	210	Right-handed 310
Helix 35	AD8	D	228	233	Right-handed alpha
Helix 36	AD9	D	236	245	Right-handed alpha
Helix 37	AE1	D	246	281	Right-handed alpha
Helix 38	AE2	E	40	48	Right-handed alpha
Helix 39	AE3	E	63	82	Right-handed alpha
Helix 40	AE4	E	87	99	Right-handed alpha
Helix 41	AE5	E	122	142	Right-handed alpha
Helix 42	AE6	E	144	149	Right-handed alpha
Helix 43	AE7	E	160	164	Right-handed 310
Helix 44	AE8	B	85	90	Right-handed 310
Helix 45	AE9	B	141	150	Right-handed alpha
Helix 46	AF1	B	186	201	Right-handed alpha
Helix 47	AF2	B	209	221	Right-handed alpha
Helix 48	AF3	B	230	235	Right-handed alpha
Helix 49	AF4	B	278	289	Right-handed alpha
Helix 50	AF5	B	293	298	Right-handed alpha
Helix 51	AF6	B	305	309	Right-handed 310
Helix 52	AF7	B	312	328	Right-handed alpha
Helix 53	AF8	B	334	339	Right-handed alpha
Helix 54	AF9	B	349	352	Right-handed 310
Helix 55	AG1	B	353	362	Right-handed alpha
Helix 56	AG2	G	76	86	Right-handed alpha
Helix 57	AG3	G	87	90	Right-handed 310
Helix 58	AG4	G	91	96	Right-handed alpha
Helix 59	AG5	G	99	114	Right-handed alpha
Helix 60	AG6	G	124	137	Right-handed alpha
Helix 61	AG7	G	141	146	Right-handed alpha
Helix 62	AG8	F	5	20	Right-handed alpha
Helix 63	AG9	F	36	41	Right-handed alpha
Helix 64	AH1	F	80	97	Right-handed alpha
Helix 65	AH2	F	119	125	Right-handed alpha
Helix 66	AH3	F	127	167	Right-handed alpha

There are 21 sheets in PDB entry 6YW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	16	18	anti-parallel
Strand 3	A	30	32	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	35	37	anti-parallel
Strand 3	A	73	75	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	82	83	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	142	143	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	177	181	anti-parallel
Strand 3	A	165	168	anti-parallel
Strand 4	A	319	321	parallel
Strand 5	A	367	368	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	266	271	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	353	358	anti-parallel
Strand 3	C	344	349	anti-parallel
Strand 4	C	329	334	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	22	25	anti-parallel
Strand 3	C	31	38	anti-parallel
Strand 4	C	41	42	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	22	25	anti-parallel
Strand 3	C	31	38	anti-parallel
Strand 4	C	46	49	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	61	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	85	87	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	61	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	76	82	anti-parallel
Strand 4	C	90	91	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	104	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	131	137	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	167	171	anti-parallel
Strand 3	C	191	197	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	210	first strand
Strand 2	C	216	221	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	238	241	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	252	first strand
Strand 2	C	257	262	anti-parallel
Strand 3	C	270	273	anti-parallel
Strand 4	C	278	281	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	36	first strand
Strand 2	D	42	46	anti-parallel
Strand 3	D	54	60	anti-parallel
Strand 4	D	93	98	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	145	first strand
Strand 2	D	151	156	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	221	223	anti-parallel
Strand 5	D	200	202	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	30	31	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	154	159	anti-parallel
Strand 4	B	301	304	parallel
Strand 5	B	344	345	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	253	254	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	54	first strand
Strand 2	F	60	64	anti-parallel
Strand 3	F	70	74	anti-parallel
Strand 4	F	114	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YW6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YW6