Analysis of interatomic Contacts of Structural Units in PDB entry:
6YW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YW9 entry

There are 3 chains in PDB entry 6YW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 76TRP 390
B
 HIS 80TRP 390
C
 HIS 80TRP 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6YW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 93Right-handed 310
Helix 2
AA2
A
94 114Right-handed alpha
Helix 3
AA3
A
135 148Right-handed alpha
Helix 4
AA4
A
157 162Right-handed alpha
Helix 5
AA5
A
163 167Right-handed 310
Helix 6
AA6
A
169 178Right-handed alpha
Helix 7
AA7
A
179 181Right-handed 310
Helix 8
AA8
A
192 201Right-handed alpha
Helix 9
AA9
A
215 231Right-handed alpha
Helix 10
AB1
A
247 258Right-handed alpha
Helix 11
AB2
A
270 274Right-handed 310
Helix 12
AB3
A
276 286Right-handed alpha
Helix 13
AB4
A
295 301Right-handed alpha
Helix 14
AB5
A
312 317Right-handed alpha
Helix 15
AB6
A
319 327Right-handed alpha
Helix 16
AB7
A
333 340Right-handed alpha
Helix 17
AB8
A
357 363Right-handed 310
Helix 18
AB9
A
367 389Right-handed alpha
Helix 19
AC1
B
89 93Right-handed 310
Helix 20
AC2
B
94 114Right-handed alpha
Helix 21
AC3
B
135 148Right-handed alpha
Helix 22
AC4
B
157 162Right-handed alpha
Helix 23
AC5
B
163 167Right-handed 310
Helix 24
AC6
B
169 178Right-handed alpha
Helix 25
AC7
B
179 181Right-handed 310
Helix 26
AC8
B
192 201Right-handed alpha
Helix 27
AC9
B
215 231Right-handed alpha
Helix 28
AD1
B
247 258Right-handed alpha
Helix 29
AD2
B
270 274Right-handed 310
Helix 30
AD3
B
276 286Right-handed alpha
Helix 31
AD4
B
295 302Right-handed alpha
Helix 32
AD5
B
312 316Right-handed 310
Helix 33
AD6
B
319 326Right-handed alpha
Helix 34
AD7
B
333 340Right-handed alpha
Helix 35
AD8
B
357 363Right-handed 310
Helix 36
AD9
B
367 389Right-handed alpha
Helix 37
AE1
C
89 93Right-handed 310
Helix 38
AE2
C
94 114Right-handed alpha
Helix 39
AE3
C
135 148Right-handed alpha
Helix 40
AE4
C
157 162Right-handed alpha
Helix 41
AE5
C
163 167Right-handed 310
Helix 42
AE6
C
169 178Right-handed alpha
Helix 43
AE7
C
179 181Right-handed 310
Helix 44
AE8
C
192 201Right-handed alpha
Helix 45
AE9
C
215 231Right-handed alpha
Helix 46
AF1
C
247 258Right-handed alpha
Helix 47
AF2
C
270 274Right-handed 310
Helix 48
AF3
C
276 286Right-handed alpha
Helix 49
AF4
C
295 302Right-handed alpha
Helix 50
AF5
C
312 316Right-handed 310
Helix 51
AF6
C
319 327Right-handed alpha
Helix 52
AF7
C
333 339Right-handed alpha
Helix 53
AF8
C
357 361Right-handed 310
Helix 54
AF9
C
367 389Right-handed alpha
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There are 6 sheets in PDB entry 6YW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 153first strand
Strand 2
A
125 130parallel
Strand 3
A
183 188parallel
Strand 4
A
205 210parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
264 268parallel
Strand 3
A
237 241parallel
Strand 4
A
305 308parallel
Strand 5
A
345 347parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 153first strand
Strand 2
B
125 130parallel
Strand 3
B
183 188parallel
Strand 4
B
205 210parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 292first strand
Strand 2
B
264 268parallel
Strand 3
B
237 241parallel
Strand 4
B
305 308parallel
Strand 5
B
345 347parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 153first strand
Strand 2
C
125 130parallel
Strand 3
C
183 188parallel
Strand 4
C
205 210parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 292first strand
Strand 2
C
264 268parallel
Strand 3
C
237 241parallel
Strand 4
C
305 308parallel
Strand 5
C
345 347parallel
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