Analysis of interatomic Contacts of Structural Units in PDB entry:
6YWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YWC entry

There are 6 chains in PDB entry 6YWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 13LYS 233
B
 ARG 10GLU 227
C
 LYS 2ASP 59
D
 GLN 13LYS 233
E
 ASP 11CYS 228
F
 LYS 2ASP 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6YWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 79Right-handed 310
Helix 2
AA2
A
100 104Right-handed 310
Helix 3
AA3
A
115 117Right-handed 310
Helix 4
AA4
A
175 177Right-handed 310
Helix 5
AA5
A
206 208Right-handed 310
Helix 6
AA6
A
220 223Right-handed 310
Helix 7
AA7
B
93 97Right-handed 310
Helix 8
AA8
B
135 142Right-handed alpha
Helix 9
AA9
B
197 202Right-handed alpha
Helix 10
AB1
C
23 25Right-handed 310
Helix 11
AB2
C
26 38Right-handed alpha
Helix 12
AB3
D
75 79Right-handed 310
Helix 13
AB4
D
100 104Right-handed 310
Helix 14
AB5
D
115 117Right-handed 310
Helix 15
AB6
D
175 177Right-handed 310
Helix 16
AB7
D
206 208Right-handed 310
Helix 17
AB8
D
220 223Right-handed 310
Helix 18
AB9
E
93 97Right-handed 310
Helix 19
AC1
E
135 142Right-handed alpha
Helix 20
AC2
E
197 202Right-handed alpha
Helix 21
AC3
F
23 25Right-handed 310
Helix 22
AC4
F
26 38Right-handed alpha
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There are 26 sheets in PDB entry 6YWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
30 37anti-parallel
Strand 3
A
91 96anti-parallel
Strand 4
A
81 86anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
126 130parallel
Strand 3
A
105 113anti-parallel
Strand 4
A
46 53anti-parallel
Strand 5
A
60 66anti-parallel
Strand 6
A
71 73anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
126 130parallel
Strand 3
A
105 113anti-parallel
Strand 4
A
119 122anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
154 164anti-parallel
Strand 3
A
195 204anti-parallel
Strand 4
A
182 184anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
154 164anti-parallel
Strand 3
A
195 204anti-parallel
Strand 4
A
188 189anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
224 229anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
84 89anti-parallel
Strand 4
B
76 81anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
116 121parallel
Strand 3
B
98 104anti-parallel
Strand 4
B
47 52anti-parallel
Strand 5
B
59 63anti-parallel
Strand 6
B
67 68anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
116 121parallel
Strand 3
B
98 104anti-parallel
Strand 4
B
111 112anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
44 45anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
187 196anti-parallel
Strand 4
B
173 177anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
158 164anti-parallel
Strand 3
B
205 212anti-parallel
Strand 4
B
219 224anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 20first strand
Strand 2
C
4 10anti-parallel
Strand 3
C
45 50anti-parallel
Strand 4
C
53 57anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
30 37anti-parallel
Strand 3
D
91 96anti-parallel
Strand 4
D
81 86anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
126 130parallel
Strand 3
D
105 113anti-parallel
Strand 4
D
46 53anti-parallel
Strand 5
D
60 66anti-parallel
Strand 6
D
71 73anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 24first strand
Strand 2
D
126 130parallel
Strand 3
D
105 113anti-parallel
Strand 4
D
119 122anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
139 143first strand
Strand 2
D
154 164anti-parallel
Strand 3
D
195 204anti-parallel
Strand 4
D
182 184anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 151first strand
Strand 2
D
154 164anti-parallel
Strand 3
D
195 204anti-parallel
Strand 4
D
188 189anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
170 173first strand
Strand 2
D
214 219anti-parallel
Strand 3
D
224 229anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 17first strand
Strand 2
E
29 35anti-parallel
Strand 3
E
84 89anti-parallel
Strand 4
E
76 81anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 24first strand
Strand 2
E
116 121parallel
Strand 3
E
98 104anti-parallel
Strand 4
E
47 52anti-parallel
Strand 5
E
59 63anti-parallel
Strand 6
E
67 68anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 24first strand
Strand 2
E
116 121parallel
Strand 3
E
98 104anti-parallel
Strand 4
E
111 112anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 41first strand
Strand 2
E
44 45anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 132first strand
Strand 2
E
143 153anti-parallel
Strand 3
E
187 196anti-parallel
Strand 4
E
173 177anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
167 168first strand
Strand 2
E
159 164anti-parallel
Strand 3
E
205 211anti-parallel
Strand 4
E
219 224anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
13 20first strand
Strand 2
F
4 10anti-parallel
Strand 3
F
45 50anti-parallel
Strand 4
F
53 57anti-parallel
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