Analysis of interatomic Contacts of Structural Units in PDB entry:
6YWD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YWD entry

There are 3 chains in PDB entry 6YWD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 9CYS 231
B
 ASP 9CYS 221
C
 VAL 3VAL 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6YWD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 74Right-handed 310
Helix 2
AA2
A
96 100Right-handed 310
Helix 3
AA3
A
171 173Right-handed 310
Helix 4
AA4
A
202 204Right-handed 310
Helix 5
AA5
B
86 90Right-handed 310
Helix 6
AA6
B
128 133Right-handed alpha
Helix 7
AA7
B
190 195Right-handed alpha
Helix 8
AA8
C
4 20Right-handed alpha
Helix 9
AA9
C
24 41Right-handed alpha
Helix 10
AB1
C
50 60Right-handed alpha
Helix 11
AB2
C
61 64Right-handed 310
Helix 12
AB3
C
66 79Right-handed alpha
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There are 11 sheets in PDB entry 6YWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 15first strand
Strand 2
A
26 33anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
77 82anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
122 126parallel
Strand 3
A
101 109anti-parallel
Strand 4
A
42 49anti-parallel
Strand 5
A
56 62anti-parallel
Strand 6
A
67 69anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
122 126parallel
Strand 3
A
101 109anti-parallel
Strand 4
A
115 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
150 160anti-parallel
Strand 3
A
191 200anti-parallel
Strand 4
A
178 180anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
150 160anti-parallel
Strand 3
A
191 200anti-parallel
Strand 4
A
184 185anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
220 225anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
27 32anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
69 74anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
109 114parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
52 56anti-parallel
Strand 6
B
60 61anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
109 114parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
104 105anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
136 146anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
166 170anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
152 157anti-parallel
Strand 3
B
199 204anti-parallel
Strand 4
B
212 216anti-parallel
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