Analysis of interatomic Contacts of Structural Units in PDB entry:
6YWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YWJ entry

There are 2 chains in PDB entry 6YWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 79TRP 390
B
 HIS 80TRP 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6YWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 93Right-handed 310
Helix 2
AA2
A
94 114Right-handed alpha
Helix 3
AA3
A
134 148Right-handed alpha
Helix 4
AA4
A
169 178Right-handed alpha
Helix 5
AA5
A
192 201Right-handed alpha
Helix 6
AA6
A
215 231Right-handed alpha
Helix 7
AA7
A
247 258Right-handed alpha
Helix 8
AA8
A
270 274Right-handed 310
Helix 9
AA9
A
276 286Right-handed alpha
Helix 10
AB1
A
295 301Right-handed alpha
Helix 11
AB2
A
312 317Right-handed 310
Helix 12
AB3
A
319 325Right-handed alpha
Helix 13
AB4
A
333 338Right-handed alpha
Helix 14
AB5
A
357 363Right-handed 310
Helix 15
AB6
A
367 389Right-handed alpha
Helix 16
AB7
B
89 93Right-handed 310
Helix 17
AB8
B
94 114Right-handed alpha
Helix 18
AB9
B
134 148Right-handed alpha
Helix 19
AC1
B
169 178Right-handed alpha
Helix 20
AC2
B
192 201Right-handed alpha
Helix 21
AC3
B
215 231Right-handed alpha
Helix 22
AC4
B
247 258Right-handed alpha
Helix 23
AC5
B
270 274Right-handed 310
Helix 24
AC6
B
276 286Right-handed alpha
Helix 25
AC7
B
295 301Right-handed alpha
Helix 26
AC8
B
312 317Right-handed 310
Helix 27
AC9
B
319 327Right-handed alpha
Helix 28
AD1
B
333 339Right-handed alpha
Helix 29
AD2
B
357 363Right-handed 310
Helix 30
AD3
B
367 389Right-handed alpha
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There are 4 sheets in PDB entry 6YWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 155first strand
Strand 2
A
125 130parallel
Strand 3
A
183 187parallel
Strand 4
A
205 207parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 293first strand
Strand 2
A
264 268parallel
Strand 3
A
237 241parallel
Strand 4
A
305 308parallel
Strand 5
A
345 347parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 155first strand
Strand 2
B
125 130parallel
Strand 3
B
183 188parallel
Strand 4
B
205 210parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 293first strand
Strand 2
B
264 268parallel
Strand 3
B
237 241parallel
Strand 4
B
305 307parallel
Strand 5
B
345 347parallel
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