Analysis of interatomic Contacts of Structural Units in PDB entry:
6YWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YWM entry

There are 3 chains in PDB entry 6YWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1LYS 172
B
 GLY 0GLU 170
C
 HIS 1LEU 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6YWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
47 57Right-handed alpha
Helix 3
AA3
A
59 73Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
107 115Right-handed alpha
Helix 6
AA6
A
116 119Right-handed 310
Helix 7
AA7
A
135 147Right-handed alpha
Helix 8
AA8
A
157 171Right-handed alpha
Helix 9
AA9
B
22 31Right-handed alpha
Helix 10
AB1
B
47 57Right-handed alpha
Helix 11
AB2
B
59 73Right-handed alpha
Helix 12
AB3
B
99 103Right-handed 310
Helix 13
AB4
B
107 115Right-handed alpha
Helix 14
AB5
B
116 119Right-handed 310
Helix 15
AB6
B
129 133Right-handed 310
Helix 16
AB7
B
135 147Right-handed alpha
Helix 17
AB8
B
157 169Right-handed alpha
Helix 18
AB9
C
22 31Right-handed alpha
Helix 19
AC1
C
47 57Right-handed alpha
Helix 20
AC2
C
59 73Right-handed alpha
Helix 21
AC3
C
99 103Right-handed 310
Helix 22
AC4
C
107 115Right-handed alpha
Helix 23
AC5
C
116 119Right-handed 310
Helix 24
AC6
C
135 147Right-handed alpha
Helix 25
AC7
C
157 169Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6YWM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
16 20anti-parallel
Strand 3
A
150 155parallel
Strand 4
A
121 124parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
91 96parallel
Strand 3
A
80 84anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
16 20anti-parallel
Strand 3
B
150 155parallel
Strand 4
B
121 124parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
91 95parallel
Strand 3
B
80 84anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
16 20anti-parallel
Strand 3
C
150 155parallel
Strand 4
C
121 124parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 39first strand
Strand 2
C
91 96parallel
Strand 3
C
80 84anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il