Analysis of interatomic Contacts of Structural Units in PDB entry:
6YWO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YWO entry

There are 4 chains in PDB entry 6YWO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 245LYS 598
B
 PHE 246LYS 598
C
 SER 247PRO 597
D
 ARG 248SER 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 72 helices in PDB entry 6YWO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
252 256Right-handed 310
Helix 2
AA2
A
264 268Right-handed 310
Helix 3
AA3
A
273 292Right-handed alpha
Helix 4
AA4
A
294 316Right-handed alpha
Helix 5
AA5
A
327 330Right-handed 310
Helix 6
AA6
A
348 352Right-handed 310
Helix 7
AA7
A
353 364Right-handed alpha
Helix 8
AA8
A
397 414Right-handed alpha
Helix 9
AA9
A
416 431Right-handed alpha
Helix 10
AB1
A
443 457Right-handed alpha
Helix 11
AB2
A
465 473Right-handed 310
Helix 12
AB3
A
487 492Right-handed alpha
Helix 13
AB4
A
493 498Right-handed 310
Helix 14
AB5
A
501 516Right-handed alpha
Helix 15
AB6
A
535 542Right-handed 310
Helix 16
AB7
A
558 563Right-handed 310
Helix 17
AB8
A
564 583Right-handed alpha
Helix 18
AB9
A
586 591Right-handed alpha
Helix 19
AC1
B
252 256Right-handed 310
Helix 20
AC2
B
264 268Right-handed 310
Helix 21
AC3
B
273 292Right-handed alpha
Helix 22
AC4
B
294 316Right-handed alpha
Helix 23
AC5
B
327 330Right-handed 310
Helix 24
AC6
B
348 352Right-handed 310
Helix 25
AC7
B
353 364Right-handed alpha
Helix 26
AC8
B
397 414Right-handed alpha
Helix 27
AC9
B
416 431Right-handed alpha
Helix 28
AD1
B
443 458Right-handed alpha
Helix 29
AD2
B
465 473Right-handed 310
Helix 30
AD3
B
487 492Right-handed alpha
Helix 31
AD4
B
493 498Right-handed 310
Helix 32
AD5
B
501 515Right-handed alpha
Helix 33
AD6
B
535 542Right-handed 310
Helix 34
AD7
B
558 563Right-handed 310
Helix 35
AD8
B
564 584Right-handed alpha
Helix 36
AD9
B
586 591Right-handed alpha
Helix 37
AE1
C
252 256Right-handed 310
Helix 38
AE2
C
264 268Right-handed 310
Helix 39
AE3
C
273 292Right-handed alpha
Helix 40
AE4
C
294 316Right-handed alpha
Helix 41
AE5
C
327 330Right-handed 310
Helix 42
AE6
C
348 352Right-handed 310
Helix 43
AE7
C
353 364Right-handed alpha
Helix 44
AE8
C
397 414Right-handed alpha
Helix 45
AE9
C
416 431Right-handed alpha
Helix 46
AF1
C
443 457Right-handed alpha
Helix 47
AF2
C
465 473Right-handed 310
Helix 48
AF3
C
487 492Right-handed alpha
Helix 49
AF4
C
493 498Right-handed 310
Helix 50
AF5
C
501 515Right-handed alpha
Helix 51
AF6
C
535 542Right-handed 310
Helix 52
AF7
C
558 563Right-handed 310
Helix 53
AF8
C
564 584Right-handed alpha
Helix 54
AF9
C
586 591Right-handed alpha
Helix 55
AG1
D
252 256Right-handed 310
Helix 56
AG2
D
264 268Right-handed 310
Helix 57
AG3
D
273 292Right-handed alpha
Helix 58
AG4
D
294 316Right-handed alpha
Helix 59
AG5
D
327 330Right-handed 310
Helix 60
AG6
D
348 352Right-handed 310
Helix 61
AG7
D
353 364Right-handed alpha
Helix 62
AG8
D
397 414Right-handed alpha
Helix 63
AG9
D
416 431Right-handed alpha
Helix 64
AH1
D
443 457Right-handed alpha
Helix 65
AH2
D
465 473Right-handed 310
Helix 66
AH3
D
487 492Right-handed alpha
Helix 67
AH4
D
493 498Right-handed 310
Helix 68
AH5
D
501 515Right-handed alpha
Helix 69
AH6
D
535 542Right-handed 310
Helix 70
AH7
D
558 563Right-handed 310
Helix 71
AH8
D
564 583Right-handed alpha
Helix 72
AH9
D
586 591Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6YWO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
340 345anti-parallel
Strand 3
A
389 395parallel
Strand 4
A
379 384anti-parallel
Strand 5
A
367 372anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 533first strand
Strand 2
A
522 525anti-parallel
Strand 3
A
549 550parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 326first strand
Strand 2
B
340 345anti-parallel
Strand 3
B
389 395parallel
Strand 4
B
379 384anti-parallel
Strand 5
B
367 372anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
522 523first strand
Strand 2
B
532 533anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
322 326first strand
Strand 2
C
340 345anti-parallel
Strand 3
C
389 395parallel
Strand 4
C
379 384anti-parallel
Strand 5
C
367 372anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
532 533first strand
Strand 2
C
522 525anti-parallel
Strand 3
C
548 550parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
322 326first strand
Strand 2
D
340 345anti-parallel
Strand 3
D
389 395parallel
Strand 4
D
379 384anti-parallel
Strand 5
D
367 372anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
532 533first strand
Strand 2
D
522 525anti-parallel
Strand 3
D
549 550parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il