Analysis of interatomic Contacts of Structural Units in PDB entry:
6YWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YWP entry

There are 2 chains in PDB entry 6YWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 248LYS 598
B
 ARG 248VAL 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6YWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
252 256Right-handed 310
Helix 2
AA2
A
264 268Right-handed 310
Helix 3
AA3
A
273 292Right-handed alpha
Helix 4
AA4
A
294 316Right-handed alpha
Helix 5
AA5
A
327 330Right-handed 310
Helix 6
AA6
A
348 352Right-handed 310
Helix 7
AA7
A
353 364Right-handed alpha
Helix 8
AA8
A
397 414Right-handed alpha
Helix 9
AA9
A
416 431Right-handed alpha
Helix 10
AB1
A
443 457Right-handed alpha
Helix 11
AB2
A
469 473Right-handed 310
Helix 12
AB3
A
487 492Right-handed alpha
Helix 13
AB4
A
493 498Right-handed 310
Helix 14
AB5
A
501 515Right-handed alpha
Helix 15
AB6
A
535 542Right-handed 310
Helix 16
AB7
A
560 563Right-handed 310
Helix 17
AB8
A
564 583Right-handed alpha
Helix 18
AB9
A
586 591Right-handed alpha
Helix 19
AC1
B
252 256Right-handed 310
Helix 20
AC2
B
264 268Right-handed 310
Helix 21
AC3
B
273 292Right-handed alpha
Helix 22
AC4
B
294 316Right-handed alpha
Helix 23
AC5
B
327 330Right-handed 310
Helix 24
AC6
B
348 353Right-handed 310
Helix 25
AC7
B
354 364Right-handed alpha
Helix 26
AC8
B
397 414Right-handed alpha
Helix 27
AC9
B
416 431Right-handed alpha
Helix 28
AD1
B
443 457Right-handed alpha
Helix 29
AD2
B
465 473Right-handed 310
Helix 30
AD3
B
487 492Right-handed alpha
Helix 31
AD4
B
493 498Right-handed 310
Helix 32
AD5
B
501 515Right-handed alpha
Helix 33
AD6
B
535 542Right-handed 310
Helix 34
AD7
B
558 563Right-handed 310
Helix 35
AD8
B
564 583Right-handed alpha
Helix 36
AD9
B
586 591Right-handed alpha
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There are 4 sheets in PDB entry 6YWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
340 345anti-parallel
Strand 3
A
389 395parallel
Strand 4
A
379 384anti-parallel
Strand 5
A
367 372anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
522 525anti-parallel
Strand 3
A
549 551parallel
Strand 4
A
554 558anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 325first strand
Strand 2
B
340 345anti-parallel
Strand 3
B
389 395parallel
Strand 4
B
380 384anti-parallel
Strand 5
B
367 371anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
532 533first strand
Strand 2
B
522 525anti-parallel
Strand 3
B
549 550parallel
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