Analysis of interatomic Contacts of Structural Units in PDB entry:
6YX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YX5 entry

There are 2 chains in PDB entry 6YX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LYS 175
B
 HIS 14LEU 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6YX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 31Right-handed alpha
Helix 2
AA2
A
67 69Right-handed 310
Helix 3
AA3
A
70 76Right-handed alpha
Helix 4
AA4
A
92 98Right-handed alpha
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
125 129Right-handed 310
Helix 7
AA7
A
132 143Right-handed alpha
Helix 8
AA8
A
157 175Right-handed alpha
Helix 9
AA9
B
30 54Right-handed alpha
Helix 10
AB1
B
60 84Right-handed alpha
Helix 11
AB2
B
97 102Right-handed alpha
Helix 12
AB3
B
120 145Right-handed alpha
Helix 13
AB4
B
162 172Right-handed alpha
Helix 14
AB5
B
177 187Right-handed alpha
Helix 15
AB6
B
195 208Right-handed alpha
Helix 16
AB7
B
209 212Right-handed 310
Helix 17
AB8
B
216 226Right-handed alpha
Helix 18
AB9
B
244 259Right-handed alpha
Helix 19
AC1
B
266 269Right-handed 310
Helix 20
AC2
B
270 281Right-handed alpha
Helix 21
AC3
B
285 311Right-handed alpha
Helix 22
AC4
B
319 349Right-handed alpha
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There are 3 sheets in PDB entry 6YX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 52first strand
Strand 2
A
55 64anti-parallel
Strand 3
A
7 14parallel
Strand 4
A
83 89parallel
Strand 5
A
115 121parallel
Strand 6
A
146 149parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
113 116parallel
Strand 3
B
93 96anti-parallel
Strand 4
B
189 190anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
316 318anti-parallel
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