Analysis of interatomic Contacts of Structural Units in PDB entry:
6YXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YXF entry

There are 2 chains in PDB entry 6YXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1CYS 380
H
 GLU 1ASN 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6YXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 111Right-handed 310
Helix 2
AA2
A
131 138Right-handed alpha
Helix 3
AA3
A
139 141Right-handed 310
Helix 4
AA4
A
145 168Right-handed alpha
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
176 205Right-handed alpha
Helix 7
AA7
A
208 239Right-handed alpha
Helix 8
AA8
A
242 265Right-handed alpha
Helix 9
AA9
A
266 273Right-handed 310
Helix 10
AB1
A
274 288Right-handed alpha
Helix 11
AB2
A
289 307Right-handed alpha
Helix 12
AB3
A
309 331Right-handed alpha
Helix 13
AB4
A
346 377Right-handed alpha
Helix 14
AB5
H
28 32Right-handed 310
Helix 15
AB6
H
62 65Right-handed 310
Helix 16
AB7
H
74 76Right-handed 310
Helix 17
AB8
H
218 222Right-handed 310
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There are 6 sheets in PDB entry 6YXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
70 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
107 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
143 146first strand
Strand 2
H
158 164anti-parallel
Strand 3
H
209 214anti-parallel
Strand 4
H
204 206anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
149 153first strand
Strand 2
H
241 246parallel
Strand 3
H
223 229anti-parallel
Strand 4
H
172 177anti-parallel
Strand 5
H
184 188anti-parallel
Strand 6
H
192 193anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
149 153first strand
Strand 2
H
241 246parallel
Strand 3
H
223 229anti-parallel
Strand 4
H
236 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il