Analysis of interatomic Contacts of Structural Units in PDB entry:
6YXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YXJ entry

There are 2 chains in PDB entry 6YXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 389SER 516
B
 THR 78SER 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6YXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
400 405Right-handed alpha
Helix 2
AA2
A
422 428Right-handed alpha
Helix 3
AA3
A
435 440Right-handed alpha
Helix 4
AA4
A
461 465Right-handed 310
Helix 5
AA5
A
467 477Right-handed alpha
Helix 6
AA6
A
496 507Right-handed alpha
Helix 7
AA7
B
79 93Right-handed alpha
Helix 8
AA8
B
96 112Right-handed alpha
Helix 9
AA9
B
114 132Right-handed alpha
Helix 10
AB1
B
134 150Right-handed alpha
Helix 11
AB2
B
158 173Right-handed alpha
Helix 12
AB3
B
173 178Right-handed alpha
Helix 13
AB4
B
181 202Right-handed alpha
Helix 14
AB5
B
214 231Right-handed alpha
Helix 15
AB6
B
233 258Right-handed alpha
Helix 16
AB7
B
261 277Right-handed alpha
Helix 17
AB8
B
280 295Right-handed alpha
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There are 3 sheets in PDB entry 6YXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
454 458parallel
Strand 3
A
448 451anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 485first strand
Strand 2
A
510 513parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
212 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il