Analysis of interatomic Contacts of Structural Units in PDB entry:
6YXO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YXO entry

There are 2 chains in PDB entry 6YXO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 27THR 302
B
 SER 27THR 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6YXO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed 310
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
45 52Right-handed alpha
Helix 4
AA4
A
52 63Right-handed alpha
Helix 5
AA5
A
63 68Right-handed alpha
Helix 6
AA6
A
73 93Right-handed alpha
Helix 7
AA7
A
105 111Right-handed 310
Helix 8
AA8
A
116 133Right-handed alpha
Helix 9
AA9
A
141 143Right-handed 310
Helix 10
AB1
A
144 162Right-handed alpha
Helix 11
AB2
A
177 191Right-handed alpha
Helix 12
AB3
A
198 202Right-handed 310
Helix 13
AB4
A
237 241Right-handed 310
Helix 14
AB5
A
247 249Right-handed 310
Helix 15
AB6
A
267 277Right-handed alpha
Helix 16
AB7
A
281 286Right-handed 310
Helix 17
AB8
B
27 32Right-handed 310
Helix 18
AB9
B
39 45Right-handed alpha
Helix 19
AC1
B
45 52Right-handed alpha
Helix 20
AC2
B
52 63Right-handed alpha
Helix 21
AC3
B
63 68Right-handed alpha
Helix 22
AC4
B
73 93Right-handed alpha
Helix 23
AC5
B
105 110Right-handed alpha
Helix 24
AC6
B
116 133Right-handed alpha
Helix 25
AC7
B
141 143Right-handed 310
Helix 26
AC8
B
144 162Right-handed alpha
Helix 27
AC9
B
177 191Right-handed alpha
Helix 28
AD1
B
237 241Right-handed 310
Helix 29
AD2
B
267 277Right-handed alpha
Helix 30
AD3
B
281 286Right-handed 310
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There are 4 sheets in PDB entry 6YXO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
169 172parallel
Strand 3
A
204 207parallel
Strand 4
A
263 266parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
218 225anti-parallel
Strand 4
A
300 301anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
169 172parallel
Strand 3
B
204 207parallel
Strand 4
B
263 266parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 245first strand
Strand 2
B
228 233anti-parallel
Strand 3
B
218 225anti-parallel
Strand 4
B
300 301anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il