Analysis of interatomic Contacts of Structural Units in PDB entry:
6YXQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YXQ entry

There are 2 chains in PDB entry 6YXQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -1GLY 186
B
 PRO 2ARG 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6YXQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
15 20Right-handed alpha
Helix 3
AA3
A
21 23Right-handed 310
Helix 4
AA4
A
25 36Right-handed alpha
Helix 5
AA5
A
46 58Right-handed alpha
Helix 6
AA6
A
59 82Right-handed alpha
Helix 7
AA7
A
86 102Right-handed alpha
Helix 8
AA8
A
108 120Right-handed alpha
Helix 9
AA9
A
123 139Right-handed alpha
Helix 10
AB1
A
142 160Right-handed alpha
Helix 11
AB2
B
5 8Right-handed 310
Helix 12
AB3
B
28 32Right-handed 310
Helix 13
AB4
B
48 72Right-handed alpha
Helix 14
AB5
B
73 84Right-handed alpha
Helix 15
AB6
B
84 98Right-handed alpha
Helix 16
AB7
B
109 132Right-handed alpha
Helix 17
AB8
B
142 153Right-handed alpha
Helix 18
AB9
B
157 169Right-handed alpha
Helix 19
AC1
B
172 187Right-handed alpha
Helix 20
AC2
B
188 212Right-handed alpha
Helix 21
AC3
B
238 263Right-handed alpha
Helix 22
AC4
B
266 272Right-handed alpha
Helix 23
AC5
B
274 297Right-handed alpha
Helix 24
AC6
B
298 300Right-handed 310
Helix 25
AC7
B
301 331Right-handed alpha
Helix 26
AC8
B
331 337Right-handed alpha
Helix 27
AC9
B
343 356Right-handed alpha
Helix 28
AD1
B
360 371Right-handed alpha
Helix 29
AD2
B
372 384Right-handed alpha
Helix 30
AD3
B
389 405Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6YXQ.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
21 25anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il