Analysis of interatomic Contacts of Structural Units in PDB entry:
6YXU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YXU entry

There are 6 chains in PDB entry 6YXU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	GLU 233
C	ASN 21	SER 1130
D	PHE 6	ALA 1283
E	SER 24	GLY 106
H	SER 2	ALA 722

There are115 helices in PDB entry 6YXU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	203	225	Right-handed alpha
Helix 4	AA4	B	29	45	Right-handed alpha
Helix 5	AA5	B	72	82	Right-handed alpha
Helix 6	AA6	B	108	110	Right-handed 310
Helix 7	AA7	B	203	224	Right-handed alpha
Helix 8	AA8	C	45	55	Right-handed alpha
Helix 9	AA9	C	58	67	Right-handed alpha
Helix 10	AB1	C	76	85	Right-handed alpha
Helix 11	AB2	C	109	117	Right-handed alpha
Helix 12	AB3	C	224	232	Right-handed alpha
Helix 13	AB4	C	235	243	Right-handed alpha
Helix 14	AB5	C	246	255	Right-handed alpha
Helix 15	AB6	C	260	273	Right-handed alpha
Helix 16	AB7	C	279	292	Right-handed alpha
Helix 17	AB8	C	300	310	Right-handed alpha
Helix 18	AB9	C	311	313	Right-handed 310
Helix 19	AC1	C	325	341	Right-handed alpha
Helix 20	AC2	C	371	394	Right-handed alpha
Helix 21	AC3	C	404	409	Right-handed alpha
Helix 22	AC4	C	411	422	Right-handed alpha
Helix 23	AC5	C	435	444	Right-handed alpha
Helix 24	AC6	C	523	529	Right-handed alpha
Helix 25	AC7	C	592	604	Right-handed alpha
Helix 26	AC8	C	621	630	Right-handed alpha
Helix 27	AC9	C	730	735	Right-handed alpha
Helix 28	AD1	C	891	895	Right-handed 310
Helix 29	AD2	C	919	933	Right-handed alpha
Helix 30	AD3	C	972	983	Right-handed alpha
Helix 31	AD4	C	1028	1032	Right-handed 310
Helix 32	AD5	C	1060	1070	Right-handed alpha
Helix 33	AD6	C	1073	1081	Right-handed alpha
Helix 34	AD7	C	1087	1100	Right-handed alpha
Helix 35	AD8	C	1115	1120	Right-handed alpha
Helix 36	AD9	D	16	23	Right-handed alpha
Helix 37	AE1	D	84	89	Right-handed 310
Helix 38	AE2	D	104	107	Right-handed 310
Helix 39	AE3	D	112	119	Right-handed alpha
Helix 40	AE4	D	121	130	Right-handed alpha
Helix 41	AE5	D	147	186	Right-handed alpha
Helix 42	AE6	D	190	227	Right-handed alpha
Helix 43	AE7	D	239	246	Right-handed alpha
Helix 44	AE8	D	257	267	Right-handed alpha
Helix 45	AE9	D	270	284	Right-handed alpha
Helix 46	AF1	D	286	305	Right-handed alpha
Helix 47	AF2	D	308	311	Right-handed 310
Helix 48	AF3	D	321	325	Right-handed 310
Helix 49	AF4	D	339	360	Right-handed alpha
Helix 50	AF5	D	363	384	Right-handed alpha
Helix 51	AF6	D	402	406	Right-handed 310
Helix 52	AF7	D	444	452	Right-handed alpha
Helix 53	AF8	D	452	464	Right-handed alpha
Helix 54	AF9	D	468	479	Right-handed alpha
Helix 55	AG1	D	486	491	Right-handed alpha
Helix 56	AG2	D	505	507	Right-handed 310
Helix 57	AG3	D	528	533	Right-handed alpha
Helix 58	AG4	D	548	558	Right-handed alpha
Helix 59	AG5	D	578	589	Right-handed alpha
Helix 60	AG6	D	614	623	Right-handed alpha
Helix 61	AG7	D	643	650	Right-handed alpha
Helix 62	AG8	D	666	674	Right-handed alpha
Helix 63	AG9	D	688	703	Right-handed alpha
Helix 64	AH1	D	704	722	Right-handed alpha
Helix 65	AH2	D	740	762	Right-handed alpha
Helix 66	AH3	D	767	778	Right-handed alpha
Helix 67	AH4	D	778	792	Right-handed alpha
Helix 68	AH5	D	796	804	Right-handed alpha
Helix 69	AH6	D	809	818	Right-handed alpha
Helix 70	AH7	D	844	851	Right-handed alpha
Helix 71	AH8	D	851	880	Right-handed alpha
Helix 72	AH9	D	913	916	Right-handed 310
Helix 73	AI1	D	944	950	Right-handed alpha
Helix 74	AI2	D	963	967	Right-handed 310
Helix 75	AI3	D	975	979	Right-handed alpha
Helix 76	AI4	D	993	1004	Right-handed alpha
Helix 77	AI5	D	1005	1009	Right-handed 310
Helix 78	AI6	D	1028	1037	Right-handed alpha
Helix 79	AI7	D	1118	1126	Right-handed alpha
Helix 80	AI8	D	1127	1145	Right-handed alpha
Helix 81	AI9	D	1151	1163	Right-handed alpha
Helix 82	AJ1	D	1184	1194	Right-handed alpha
Helix 83	AJ2	D	1221	1228	Right-handed alpha
Helix 84	AJ3	D	1229	1240	Right-handed alpha
Helix 85	AJ4	D	1249	1256	Right-handed alpha
Helix 86	AJ5	D	1265	1270	Right-handed alpha
Helix 87	AJ6	E	30	34	Right-handed 310
Helix 88	AJ7	E	39	44	Right-handed alpha
Helix 89	AJ8	E	46	67	Right-handed alpha
Helix 90	AJ9	E	87	98	Right-handed alpha
Helix 91	AK1	H	4	41	Right-handed alpha
Helix 92	AK2	H	45	67	Right-handed alpha
Helix 93	AK3	H	156	163	Right-handed alpha
Helix 94	AK4	H	170	188	Right-handed alpha
Helix 95	AK5	H	204	220	Right-handed alpha
Helix 96	AK6	H	235	245	Right-handed alpha
Helix 97	AK7	H	274	280	Right-handed 310
Helix 98	AK8	H	284	293	Right-handed alpha
Helix 99	AK9	H	316	329	Right-handed alpha
Helix 100	AL1	H	337	358	Right-handed alpha
Helix 101	AL2	H	370	382	Right-handed alpha
Helix 102	AL3	H	386	395	Right-handed alpha
Helix 103	AL4	H	399	409	Right-handed alpha
Helix 104	AL5	H	414	418	Right-handed 310
Helix 105	AL6	H	436	447	Right-handed alpha
Helix 106	AL7	H	450	465	Right-handed alpha
Helix 107	AL8	H	509	516	Right-handed alpha
Helix 108	AL9	H	529	533	Right-handed 310
Helix 109	AM1	H	534	545	Right-handed alpha
Helix 110	AM2	H	555	559	Right-handed 310
Helix 111	AM3	H	568	573	Right-handed alpha
Helix 112	AM4	H	593	604	Right-handed alpha
Helix 113	AM5	H	633	645	Right-handed alpha
Helix 114	AM6	H	680	687	Right-handed alpha
Helix 115	AM7	H	691	699	Right-handed alpha

There are 42 sheets in PDB entry 6YXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	191	198	anti-parallel
Strand 4	A	171	179	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	133	143	anti-parallel
Strand 4	A	48	56	anti-parallel
Strand 5	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	135	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	124	126	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	141	149	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	489	490	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	179	180	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	213	217	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	353	354	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	514	522	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	511	anti-parallel
Strand 3	C	569	571	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	553	first strand
Strand 2	C	559	562	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	878	anti-parallel
Strand 4	C	884	889	anti-parallel
Strand 5	C	726	728	parallel
Strand 6	C	906	908	anti-parallel
Strand 7	C	708	714	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	751	first strand
Strand 2	C	856	868	anti-parallel
Strand 3	C	836	845	anti-parallel
Strand 4	C	786	787	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	956	957	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	516	anti-parallel
Strand 6	D	440	443	parallel
Strand 7	D	521	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1127	1129	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1243	1244	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	95	parallel
Strand 3	D	317	319	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	313	314	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	138	anti-parallel
Strand 3	D	253	255	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	637	first strand
Strand 2	D	661	665	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	899	first strand
Strand 2	D	958	961	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	901	902	first strand
Strand 2	D	910	911	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	922	923	first strand
Strand 2	D	942	943	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1082	first strand
Strand 2	D	1062	1068	anti-parallel
Strand 3	D	1052	1059	anti-parallel
Strand 4	D	1105	1106	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1170	anti-parallel
Strand 3	D	1203	1206	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	98	103	anti-parallel
Strand 3	H	82	86	parallel
Strand 4	H	71	77	anti-parallel
Strand 5	H	123	131	anti-parallel
Strand 6	H	136	141	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	254	257	first strand
Strand 2	H	229	232	parallel
Strand 3	H	525	527	parallel
Strand 4	H	550	552	parallel
Strand 5	H	194	196	parallel
Strand 6	H	580	582	parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	653	654	first strand
Strand 2	H	675	679	parallel
Strand 3	H	705	709	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YXU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YXU