Analysis of interatomic Contacts of Structural Units in PDB entry:
6YXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YXW entry

There are 4 chains in PDB entry 6YXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 167
B
 ASN 4VAL 92
C
 MET 1LYS 167
D
 SER 5VAL 92
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6YXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
65 75Right-handed alpha
Helix 3
AA3
A
86 105Right-handed alpha
Helix 4
AA4
A
126 138Right-handed alpha
Helix 5
AA5
A
151 166Right-handed alpha
Helix 6
AA6
B
7 24Right-handed alpha
Helix 7
AA7
C
15 26Right-handed alpha
Helix 8
AA8
C
65 75Right-handed alpha
Helix 9
AA9
C
86 105Right-handed alpha
Helix 10
AB1
C
126 138Right-handed alpha
Helix 11
AB2
C
151 167Right-handed alpha
Helix 12
AB3
D
7 23Right-handed alpha
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There are 4 sheets in PDB entry 6YXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 41first strand
Strand 2
B
46 58anti-parallel
Strand 3
B
61 73anti-parallel
Strand 4
B
83 91anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 46first strand
Strand 2
C
49 57anti-parallel
Strand 3
C
2 9parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 41first strand
Strand 2
D
46 57anti-parallel
Strand 3
D
62 73anti-parallel
Strand 4
D
83 91anti-parallel
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