Analysis of interatomic Contacts of Structural Units in PDB entry:
6YY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YY0 entry

There are 14 chains in PDB entry 6YY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	GLU 509
B	VAL 23	PHE 508
C	ALA 6	PHE 508
D	THR 13	HIS 481
E	THR 13	GLU 479
F	THR 13	GLU 479
G	ALA 1	LEU 272
H	GLN 15	GLU 146
I	VAL 1	VAL 47
J	VAL 8	SER 54
S	PHE 1	GLU 188
b	TYR 74	GLN 209
d	LYS 4	THR 159
h	ASP 5	PRO 66

There are156 helices in PDB entry 6YY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	17	Right-handed alpha
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	150	157	Right-handed alpha
Helix 4	AA4	A	174	186	Right-handed alpha
Helix 5	AA5	A	186	192	Right-handed alpha
Helix 6	AA6	A	209	223	Right-handed alpha
Helix 7	AA7	A	239	260	Right-handed alpha
Helix 8	AA8	A	270	285	Right-handed alpha
Helix 9	AA9	A	290	294	Right-handed 310
Helix 10	AB1	A	298	307	Right-handed alpha
Helix 11	AB2	A	336	346	Right-handed alpha
Helix 12	AB3	A	354	359	Right-handed alpha
Helix 13	AB4	A	374	379	Right-handed 310
Helix 14	AB5	A	380	399	Right-handed alpha
Helix 15	AB6	A	401	406	Right-handed 310
Helix 16	AB7	A	411	429	Right-handed alpha
Helix 17	AB8	A	437	450	Right-handed alpha
Helix 18	AB9	A	457	475	Right-handed alpha
Helix 19	AC1	A	476	487	Right-handed alpha
Helix 20	AC2	A	490	506	Right-handed alpha
Helix 21	AC3	B	78	82	Right-handed 310
Helix 22	AC4	B	100	104	Right-handed 310
Helix 23	AC5	B	150	157	Right-handed alpha
Helix 24	AC6	B	174	186	Right-handed alpha
Helix 25	AC7	B	186	191	Right-handed alpha
Helix 26	AC8	B	209	223	Right-handed alpha
Helix 27	AC9	B	239	260	Right-handed alpha
Helix 28	AD1	B	270	285	Right-handed alpha
Helix 29	AD2	B	290	294	Right-handed 310
Helix 30	AD3	B	297	307	Right-handed alpha
Helix 31	AD4	B	336	346	Right-handed alpha
Helix 32	AD5	B	353	360	Right-handed alpha
Helix 33	AD6	B	374	378	Right-handed 310
Helix 34	AD7	B	380	399	Right-handed alpha
Helix 35	AD8	B	412	428	Right-handed alpha
Helix 36	AD9	B	437	450	Right-handed alpha
Helix 37	AE1	B	460	475	Right-handed alpha
Helix 38	AE2	B	476	487	Right-handed alpha
Helix 39	AE3	B	490	507	Right-handed alpha
Helix 40	AE4	C	7	18	Right-handed alpha
Helix 41	AE5	C	100	104	Right-handed 310
Helix 42	AE6	C	150	156	Right-handed alpha
Helix 43	AE7	C	174	186	Right-handed alpha
Helix 44	AE8	C	186	192	Right-handed alpha
Helix 45	AE9	C	209	223	Right-handed alpha
Helix 46	AF1	C	239	259	Right-handed alpha
Helix 47	AF2	C	270	285	Right-handed alpha
Helix 48	AF3	C	290	294	Right-handed 310
Helix 49	AF4	C	295	296	Right-handed 310
Helix 50	AF5	C	297	307	Right-handed alpha
Helix 51	AF6	C	313	317	Right-handed 310
Helix 52	AF7	C	336	346	Right-handed alpha
Helix 53	AF8	C	353	359	Right-handed alpha
Helix 54	AF9	C	380	400	Right-handed alpha
Helix 55	AG1	C	411	429	Right-handed alpha
Helix 56	AG2	C	437	450	Right-handed alpha
Helix 57	AG3	C	452	456	Right-handed 310
Helix 58	AG4	C	460	476	Right-handed alpha
Helix 59	AG5	C	476	487	Right-handed alpha
Helix 60	AG6	C	490	507	Right-handed alpha
Helix 61	AG7	D	126	130	Right-handed 310
Helix 62	AG8	D	141	148	Right-handed alpha
Helix 63	AG9	D	165	177	Right-handed alpha
Helix 64	AH1	D	193	208	Right-handed alpha
Helix 65	AH2	D	229	249	Right-handed alpha
Helix 66	AH3	D	262	274	Right-handed alpha
Helix 67	AH4	D	275	277	Right-handed 310
Helix 68	AH5	D	288	298	Right-handed alpha
Helix 69	AH6	D	317	320	Right-handed 310
Helix 70	AH7	D	323	330	Right-handed alpha
Helix 71	AH8	D	331	333	Right-handed 310
Helix 72	AH9	D	340	345	Right-handed alpha
Helix 73	AI1	D	368	393	Right-handed alpha
Helix 74	AI2	D	396	400	Right-handed 310
Helix 75	AI3	D	403	418	Right-handed alpha
Helix 76	AI4	D	425	430	Right-handed alpha
Helix 77	AI5	D	437	451	Right-handed alpha
Helix 78	AI6	D	457	462	Right-handed 310
Helix 79	AI7	D	466	480	Right-handed alpha
Helix 80	AI8	E	91	95	Right-handed 310
Helix 81	AI9	E	141	148	Right-handed alpha
Helix 82	AJ1	E	165	180	Right-handed alpha
Helix 83	AJ2	E	193	208	Right-handed alpha
Helix 84	AJ3	E	229	234	Right-handed alpha
Helix 85	AJ4	E	235	250	Right-handed alpha
Helix 86	AJ5	E	261	277	Right-handed alpha
Helix 87	AJ6	E	288	298	Right-handed alpha
Helix 88	AJ7	E	316	320	Right-handed 310
Helix 89	AJ8	E	323	330	Right-handed alpha
Helix 90	AJ9	E	340	345	Right-handed alpha
Helix 91	AK1	E	363	368	Right-handed alpha
Helix 92	AK2	E	368	396	Right-handed alpha
Helix 93	AK3	E	397	400	Right-handed 310
Helix 94	AK4	E	401	419	Right-handed alpha
Helix 95	AK5	E	422	424	Right-handed 310
Helix 96	AK6	E	425	430	Right-handed alpha
Helix 97	AK7	E	437	451	Right-handed alpha
Helix 98	AK8	E	457	462	Right-handed 310
Helix 99	AK9	E	466	479	Right-handed alpha
Helix 100	AL1	F	91	95	Right-handed 310
Helix 101	AL2	F	141	147	Right-handed alpha
Helix 102	AL3	F	165	180	Right-handed alpha
Helix 103	AL4	F	193	207	Right-handed alpha
Helix 104	AL5	F	229	235	Right-handed alpha
Helix 105	AL6	F	236	249	Right-handed alpha
Helix 106	AL7	F	262	276	Right-handed alpha
Helix 107	AL8	F	288	298	Right-handed alpha
Helix 108	AL9	F	317	320	Right-handed 310
Helix 109	AM1	F	323	330	Right-handed alpha
Helix 110	AM2	F	331	333	Right-handed 310
Helix 111	AM3	F	340	346	Right-handed alpha
Helix 112	AM4	F	369	395	Right-handed alpha
Helix 113	AM5	F	401	418	Right-handed alpha
Helix 114	AM6	F	425	430	Right-handed alpha
Helix 115	AM7	F	437	451	Right-handed alpha
Helix 116	AM8	F	457	461	Right-handed 310
Helix 117	AM9	F	466	479	Right-handed alpha
Helix 118	AN1	G	2	55	Right-handed alpha
Helix 119	AN2	G	81	100	Right-handed alpha
Helix 120	AN3	G	109	116	Right-handed alpha
Helix 121	AN4	G	137	151	Right-handed alpha
Helix 122	AN5	G	180	186	Right-handed alpha
Helix 123	AN6	G	187	192	Right-handed 310
Helix 124	AN7	G	199	271	Right-handed alpha
Helix 125	AN8	H	101	103	Right-handed 310
Helix 126	AN9	H	105	121	Right-handed alpha
Helix 127	AO1	H	124	146	Right-handed alpha
Helix 128	AO2	I	2	7	Right-handed alpha
Helix 129	AO3	I	10	24	Right-handed alpha
Helix 130	AO4	I	27	36	Right-handed alpha
Helix 131	AO5	J	14	19	Right-handed alpha
Helix 132	AO6	J	20	54	Right-handed alpha
Helix 133	AO7	S	13	28	Right-handed alpha
Helix 134	AO8	S	31	46	Right-handed alpha
Helix 135	AO9	S	48	56	Right-handed alpha
Helix 136	AP1	S	61	77	Right-handed alpha
Helix 137	AP2	S	79	92	Right-handed alpha
Helix 138	AP3	S	93	96	Right-handed 310
Helix 139	AP4	S	97	113	Right-handed alpha
Helix 140	AP5	S	127	142	Right-handed alpha
Helix 141	AP6	S	174	188	Right-handed alpha
Helix 142	AP7	b	74	77	Right-handed 310
Helix 143	AP8	b	78	119	Right-handed alpha
Helix 144	AP9	b	122	185	Right-handed alpha
Helix 145	AQ1	b	189	209	Right-handed alpha
Helix 146	AQ2	d	14	18	Right-handed 310
Helix 147	AQ3	d	23	44	Right-handed alpha
Helix 148	AQ4	d	52	58	Right-handed alpha
Helix 149	AQ5	d	62	76	Right-handed alpha
Helix 150	AQ6	d	84	87	Right-handed 310
Helix 151	AQ7	d	88	99	Right-handed alpha
Helix 152	AQ8	d	102	123	Right-handed alpha
Helix 153	AQ9	d	131	139	Right-handed alpha
Helix 154	AR1	d	140	143	Right-handed 310
Helix 155	AR2	h	8	25	Right-handed alpha
Helix 156	AR3	h	31	51	Right-handed alpha

There are 24 sheets in PDB entry 6YY0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	87	90	anti-parallel
Strand 3	A	52	55	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	71	75	anti-parallel
Strand 6	A	38	43	anti-parallel
Strand 7	A	29	35	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	320	328	parallel
Strand 3	A	263	269	parallel
Strand 4	A	200	206	parallel
Strand 5	A	229	234	parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	87	90	anti-parallel
Strand 3	B	52	55	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	B	71	75	anti-parallel
Strand 6	B	38	43	anti-parallel
Strand 7	B	29	33	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	169	first strand
Strand 2	B	326	328	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	199	206	parallel
Strand 3	B	263	269	parallel
Strand 4	B	320	323	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	35	first strand
Strand 2	C	38	43	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	52	55	anti-parallel
Strand 6	C	88	90	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	169	first strand
Strand 2	C	320	328	parallel
Strand 3	C	263	269	parallel
Strand 4	C	200	206	parallel
Strand 5	C	229	234	parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	78	81	anti-parallel
Strand 3	D	39	42	anti-parallel
Strand 4	D	50	56	anti-parallel
Strand 5	D	61	66	anti-parallel
Strand 6	D	24	29	anti-parallel
Strand 7	D	15	21	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	90	first strand
Strand 2	D	116	119	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	160	first strand
Strand 2	D	307	315	parallel
Strand 3	D	254	260	parallel
Strand 4	D	184	190	parallel
Strand 5	D	220	224	parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	16	first strand
Strand 2	E	78	81	anti-parallel
Strand 3	E	39	42	anti-parallel
Strand 4	E	50	56	anti-parallel
Strand 5	E	61	66	anti-parallel
Strand 6	E	24	28	anti-parallel
Strand 7	E	16	21	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	89	first strand
Strand 2	E	117	119	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	338	first strand
Strand 2	E	156	159	parallel
Strand 3	E	307	313	parallel
Strand 4	E	254	259	parallel
Strand 5	E	185	192	parallel
Strand 6	E	220	225	parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	14	16	first strand
Strand 2	F	78	81	anti-parallel
Strand 3	F	39	43	anti-parallel
Strand 4	F	50	56	anti-parallel
Strand 5	F	61	66	anti-parallel
Strand 6	F	24	28	anti-parallel
Strand 7	F	16	21	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	117	119	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	160	first strand
Strand 2	F	307	315	parallel
Strand 3	F	254	259	parallel
Strand 4	F	185	190	parallel
Strand 5	F	219	224	parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	178	first strand
Strand 2	G	157	167	anti-parallel
Strand 3	G	65	71	parallel
Strand 4	G	102	108	parallel
Strand 5	G	124	128	parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	47	first strand
Strand 2	H	35	38	anti-parallel
Strand 3	H	61	66	anti-parallel
Strand 4	H	72	77	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	57	first strand
Strand 2	H	80	84	anti-parallel
Strand 3	H	90	94	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	115	117	first strand
Strand 2	S	147	149	parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	152	154	first strand
Strand 2	S	118	122	parallel
Strand 3	S	162	166	anti-parallel
Strand 4	S	169	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YY0