Analysis of interatomic Contacts of Structural Units in PDB entry:
6YYH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YYH entry

There are 2 chains in PDB entry 6YYH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 502
B	HIS 3	TYR 502

There are 41 helices in PDB entry 6YYH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	20	Right-handed 310
Helix 2	AA2	A	27	32	Right-handed 310
Helix 3	AA3	A	33	47	Right-handed alpha
Helix 4	AA4	A	80	94	Right-handed alpha
Helix 5	AA5	A	105	109	Right-handed 310
Helix 6	AA6	A	127	147	Right-handed alpha
Helix 7	AA7	A	147	152	Right-handed alpha
Helix 8	AA8	A	168	171	Right-handed 310
Helix 9	AA9	A	172	191	Right-handed alpha
Helix 10	AB1	A	206	220	Right-handed alpha
Helix 11	AB2	A	250	266	Right-handed alpha
Helix 12	AB3	A	287	291	Right-handed 310
Helix 13	AB4	A	292	306	Right-handed alpha
Helix 14	AB5	A	307	309	Right-handed 310
Helix 15	AB6	A	341	343	Right-handed 310
Helix 16	AB7	A	346	355	Right-handed alpha
Helix 17	AB8	A	356	358	Right-handed 310
Helix 18	AB9	A	422	431	Right-handed alpha
Helix 19	AC1	A	437	448	Right-handed alpha
Helix 20	AC2	A	486	490	Right-handed 310
Helix 21	AC3	A	494	498	Right-handed 310
Helix 22	AC4	B	16	20	Right-handed 310
Helix 23	AC5	B	27	32	Right-handed 310
Helix 24	AC6	B	33	45	Right-handed alpha
Helix 25	AC7	B	80	94	Right-handed alpha
Helix 26	AC8	B	105	109	Right-handed 310
Helix 27	AC9	B	127	147	Right-handed alpha
Helix 28	AD1	B	147	152	Right-handed alpha
Helix 29	AD2	B	168	171	Right-handed 310
Helix 30	AD3	B	172	191	Right-handed alpha
Helix 31	AD4	B	206	219	Right-handed alpha
Helix 32	AD5	B	250	266	Right-handed alpha
Helix 33	AD6	B	287	291	Right-handed 310
Helix 34	AD7	B	292	306	Right-handed alpha
Helix 35	AD8	B	307	309	Right-handed 310
Helix 36	AD9	B	346	355	Right-handed alpha
Helix 37	AE1	B	356	358	Right-handed 310
Helix 38	AE2	B	422	431	Right-handed alpha
Helix 39	AE3	B	437	448	Right-handed alpha
Helix 40	AE4	B	486	490	Right-handed 310
Helix 41	AE5	B	494	498	Right-handed 310

There are 13 sheets in PDB entry 6YYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	396	403	parallel
Strand 3	A	463	470	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	25	first strand
Strand 2	A	51	54	parallel
Strand 3	A	96	101	parallel
Strand 4	A	156	158	parallel
Strand 5	A	196	201	parallel
Strand 6	A	225	230	parallel
Strand 7	A	274	279	parallel
Strand 8	A	312	315	parallel
Strand 9	A	22	25	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	70	first strand
Strand 2	A	73	78	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	120	121	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	344	345	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	366	first strand
Strand 2	A	369	373	anti-parallel
Strand 3	A	379	385	anti-parallel
Strand 4	A	474	482	anti-parallel
Strand 5	A	408	416	anti-parallel
Strand 6	A	451	458	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	396	403	parallel
Strand 3	B	463	470	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	369	374	anti-parallel
Strand 4	B	378	385	anti-parallel
Strand 5	B	474	482	anti-parallel
Strand 6	B	408	416	anti-parallel
Strand 7	B	451	458	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	51	54	parallel
Strand 3	B	96	101	parallel
Strand 4	B	156	158	parallel
Strand 5	B	196	201	parallel
Strand 6	B	225	230	parallel
Strand 7	B	274	279	parallel
Strand 8	B	312	315	parallel
Strand 9	B	22	24	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	70	first strand
Strand 2	B	73	78	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	120	121	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	243	244	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	344	345	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YYH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YYH