Analysis of interatomic Contacts of Structural Units in PDB entry:
6YYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YYJ entry

There are 9 chains in PDB entry 6YYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 162
B
 MET 1GLY 71
B
 ALA 73ALA 172
C
 MET 1SER 162
D
 MET 1GLY 71
D
 ALA 73ALA 172
E
 MET 1SER 162
F
 MET 1GLY 71
F
 ALA 73ALA 172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6YYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
20 47Right-handed alpha
Helix 3
AA3
A
47 63Right-handed alpha
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
77 102Right-handed alpha
Helix 6
AA6
A
104 111Right-handed alpha
Helix 7
AA7
A
114 122Right-handed alpha
Helix 8
AA8
A
125 140Right-handed alpha
Helix 9
AA9
A
143 162Right-handed alpha
Helix 10
AB1
B
3 15Right-handed alpha
Helix 11
AB2
B
20 33Right-handed alpha
Helix 12
AB3
B
33 46Right-handed alpha
Helix 13
AB4
B
47 63Right-handed alpha
Helix 14
AB5
B
64 67Right-handed 310
Helix 15
AB6
B
75 100Right-handed alpha
Helix 16
AB7
B
102 109Right-handed alpha
Helix 17
AB8
B
112 121Right-handed alpha
Helix 18
AB9
B
123 143Right-handed alpha
Helix 19
AC1
B
153 172Right-handed alpha
Helix 20
AC2
C
3 15Right-handed alpha
Helix 21
AC3
C
20 47Right-handed alpha
Helix 22
AC4
C
47 63Right-handed alpha
Helix 23
AC5
C
64 68Right-handed 310
Helix 24
AC6
C
77 102Right-handed alpha
Helix 25
AC7
C
104 111Right-handed alpha
Helix 26
AC8
C
114 122Right-handed alpha
Helix 27
AC9
C
125 140Right-handed alpha
Helix 28
AD1
C
143 161Right-handed alpha
Helix 29
AD2
D
3 15Right-handed alpha
Helix 30
AD3
D
20 33Right-handed alpha
Helix 31
AD4
D
33 47Right-handed alpha
Helix 32
AD5
D
47 63Right-handed alpha
Helix 33
AD6
D
64 67Right-handed 310
Helix 34
AD7
D
75 100Right-handed alpha
Helix 35
AD8
D
102 109Right-handed alpha
Helix 36
AD9
D
112 121Right-handed alpha
Helix 37
AE1
D
123 143Right-handed alpha
Helix 38
AE2
D
153 171Right-handed alpha
Helix 39
AE3
E
3 15Right-handed alpha
Helix 40
AE4
E
20 47Right-handed alpha
Helix 41
AE5
E
47 63Right-handed alpha
Helix 42
AE6
E
64 68Right-handed 310
Helix 43
AE7
E
77 102Right-handed alpha
Helix 44
AE8
E
104 111Right-handed alpha
Helix 45
AE9
E
114 122Right-handed alpha
Helix 46
AF1
E
125 140Right-handed alpha
Helix 47
AF2
E
143 161Right-handed alpha
Helix 48
AF3
F
3 14Right-handed alpha
Helix 49
AF4
F
20 33Right-handed alpha
Helix 50
AF5
F
33 47Right-handed alpha
Helix 51
AF6
F
47 63Right-handed alpha
Helix 52
AF7
F
64 67Right-handed 310
Helix 53
AF8
F
75 100Right-handed alpha
Helix 54
AF9
F
102 109Right-handed alpha
Helix 55
AG1
F
112 121Right-handed alpha
Helix 56
AG2
F
123 143Right-handed alpha
Helix 57
AG3
F
153 172Right-handed alpha
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There are no sheets in PDB entry 6YYJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il