Analysis of interatomic Contacts of Structural Units in PDB entry:
6YYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YYL entry

There are 2 chains in PDB entry 6YYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 580ASN 726
C
 ASP 580ASN 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6YYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
585 591Right-handed alpha
Helix 2
AA2
A
609 622Right-handed alpha
Helix 3
AA3
A
650 661Right-handed alpha
Helix 4
AA4
A
683 692Right-handed alpha
Helix 5
AA5
A
694 699Right-handed 310
Helix 6
AA6
A
700 704Right-handed 310
Helix 7
AA7
C
585 591Right-handed alpha
Helix 8
AA8
C
609 622Right-handed alpha
Helix 9
AA9
C
651 661Right-handed alpha
Helix 10
AB1
C
683 692Right-handed alpha
Helix 11
AB2
C
694 699Right-handed 310
Helix 12
AB3
C
700 704Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6YYL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
675 678first strand
Strand 2
A
598 602anti-parallel
Strand 3
A
638 647anti-parallel
Strand 4
A
625 633anti-parallel
Strand 5
A
706 708anti-parallel
Strand 6
A
718 719anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
675 678first strand
Strand 2
C
598 602anti-parallel
Strand 3
C
638 647anti-parallel
Strand 4
C
625 633anti-parallel
Strand 5
C
706 708anti-parallel
Strand 6
C
718 719anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il