Analysis of interatomic Contacts of Structural Units in PDB entry:
6YYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6YYS entry

There are 6 chains in PDB entry 6YYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 224
B	MET 1	GLU 233
C	ASN 21	SER 1130
D	PHE 6	ALA 1283
E	SER 24	GLY 106
H	MET 1	ALA 717

There are129 helices in PDB entry 6YYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	46	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	106	110	Right-handed 310
Helix 4	AA4	A	151	156	Right-handed alpha
Helix 5	AA5	A	203	220	Right-handed alpha
Helix 6	AA6	A	221	223	Right-handed 310
Helix 7	AA7	B	34	45	Right-handed alpha
Helix 8	AA8	B	72	81	Right-handed alpha
Helix 9	AA9	B	108	110	Right-handed 310
Helix 10	AB1	B	203	224	Right-handed alpha
Helix 11	AB2	C	49	57	Right-handed alpha
Helix 12	AB3	C	58	68	Right-handed alpha
Helix 13	AB4	C	76	85	Right-handed alpha
Helix 14	AB5	C	109	117	Right-handed alpha
Helix 15	AB6	C	217	220	Right-handed 310
Helix 16	AB7	C	225	232	Right-handed alpha
Helix 17	AB8	C	235	243	Right-handed alpha
Helix 18	AB9	C	247	254	Right-handed alpha
Helix 19	AC1	C	260	273	Right-handed alpha
Helix 20	AC2	C	279	289	Right-handed alpha
Helix 21	AC3	C	300	312	Right-handed alpha
Helix 22	AC4	C	327	341	Right-handed alpha
Helix 23	AC5	C	371	396	Right-handed alpha
Helix 24	AC6	C	404	409	Right-handed alpha
Helix 25	AC7	C	411	422	Right-handed alpha
Helix 26	AC8	C	435	441	Right-handed alpha
Helix 27	AC9	C	467	471	Right-handed 310
Helix 28	AD1	C	523	528	Right-handed alpha
Helix 29	AD2	C	579	583	Right-handed 310
Helix 30	AD3	C	587	591	Right-handed 310
Helix 31	AD4	C	592	605	Right-handed alpha
Helix 32	AD5	C	623	628	Right-handed alpha
Helix 33	AD6	C	730	735	Right-handed alpha
Helix 34	AD7	C	768	773	Right-handed 310
Helix 35	AD8	C	891	895	Right-handed 310
Helix 36	AD9	C	919	933	Right-handed alpha
Helix 37	AE1	C	944	948	Right-handed 310
Helix 38	AE2	C	973	978	Right-handed alpha
Helix 39	AE3	C	978	983	Right-handed alpha
Helix 40	AE4	C	1027	1031	Right-handed 310
Helix 41	AE5	C	1060	1070	Right-handed alpha
Helix 42	AE6	C	1073	1082	Right-handed alpha
Helix 43	AE7	C	1089	1100	Right-handed alpha
Helix 44	AE8	C	1112	1121	Right-handed alpha
Helix 45	AE9	D	16	24	Right-handed alpha
Helix 46	AF1	D	36	40	Right-handed 310
Helix 47	AF2	D	86	90	Right-handed 310
Helix 48	AF3	D	112	118	Right-handed alpha
Helix 49	AF4	D	124	130	Right-handed alpha
Helix 50	AF5	D	140	146	Right-handed alpha
Helix 51	AF6	D	149	187	Right-handed alpha
Helix 52	AF7	D	190	228	Right-handed alpha
Helix 53	AF8	D	237	247	Right-handed alpha
Helix 54	AF9	D	257	267	Right-handed alpha
Helix 55	AG1	D	270	284	Right-handed alpha
Helix 56	AG2	D	288	301	Right-handed alpha
Helix 57	AG3	D	308	313	Right-handed 310
Helix 58	AG4	D	321	325	Right-handed 310
Helix 59	AG5	D	340	361	Right-handed alpha
Helix 60	AG6	D	363	382	Right-handed alpha
Helix 61	AG7	D	401	405	Right-handed 310
Helix 62	AG8	D	447	452	Right-handed alpha
Helix 63	AG9	D	452	463	Right-handed alpha
Helix 64	AH1	D	469	479	Right-handed alpha
Helix 65	AH2	D	485	490	Right-handed alpha
Helix 66	AH3	D	505	507	Right-handed 310
Helix 67	AH4	D	548	558	Right-handed alpha
Helix 68	AH5	D	578	589	Right-handed alpha
Helix 69	AH6	D	601	605	Right-handed 310
Helix 70	AH7	D	614	624	Right-handed alpha
Helix 71	AH8	D	643	651	Right-handed alpha
Helix 72	AH9	D	666	674	Right-handed alpha
Helix 73	AI1	D	688	703	Right-handed alpha
Helix 74	AI2	D	704	725	Right-handed alpha
Helix 75	AI3	D	740	762	Right-handed alpha
Helix 76	AI4	D	765	777	Right-handed alpha
Helix 77	AI5	D	780	792	Right-handed alpha
Helix 78	AI6	D	796	804	Right-handed alpha
Helix 79	AI7	D	809	818	Right-handed alpha
Helix 80	AI8	D	844	857	Right-handed alpha
Helix 81	AI9	D	857	880	Right-handed alpha
Helix 82	AJ1	D	914	919	Right-handed alpha
Helix 83	AJ2	D	944	954	Right-handed alpha
Helix 84	AJ3	D	975	979	Right-handed alpha
Helix 85	AJ4	D	994	1004	Right-handed alpha
Helix 86	AJ5	D	1005	1009	Right-handed 310
Helix 87	AJ6	D	1020	1024	Right-handed 310
Helix 88	AJ7	D	1028	1038	Right-handed alpha
Helix 89	AJ8	D	1118	1126	Right-handed alpha
Helix 90	AJ9	D	1129	1146	Right-handed alpha
Helix 91	AK1	D	1151	1161	Right-handed alpha
Helix 92	AK2	D	1184	1193	Right-handed alpha
Helix 93	AK3	D	1210	1217	Right-handed alpha
Helix 94	AK4	D	1221	1227	Right-handed alpha
Helix 95	AK5	D	1229	1241	Right-handed alpha
Helix 96	AK6	D	1251	1256	Right-handed alpha
Helix 97	AK7	D	1265	1270	Right-handed alpha
Helix 98	AK8	D	1276	1281	Right-handed alpha
Helix 99	AK9	E	30	34	Right-handed 310
Helix 100	AL1	E	39	43	Right-handed 310
Helix 101	AL2	E	47	67	Right-handed alpha
Helix 102	AL3	E	87	98	Right-handed alpha
Helix 103	AL4	H	3	41	Right-handed alpha
Helix 104	AL5	H	45	67	Right-handed alpha
Helix 105	AL6	H	106	110	Right-handed 310
Helix 106	AL7	H	175	188	Right-handed alpha
Helix 107	AL8	H	204	220	Right-handed alpha
Helix 108	AL9	H	235	239	Right-handed 310
Helix 109	AM1	H	241	246	Right-handed alpha
Helix 110	AM2	H	246	251	Right-handed alpha
Helix 111	AM3	H	275	281	Right-handed alpha
Helix 112	AM4	H	283	295	Right-handed alpha
Helix 113	AM5	H	316	329	Right-handed alpha
Helix 114	AM6	H	333	355	Right-handed alpha
Helix 115	AM7	H	372	377	Right-handed alpha
Helix 116	AM8	H	384	392	Right-handed alpha
Helix 117	AM9	H	401	409	Right-handed alpha
Helix 118	AN1	H	411	417	Right-handed alpha
Helix 119	AN2	H	435	447	Right-handed alpha
Helix 120	AN3	H	454	474	Right-handed alpha
Helix 121	AN4	H	494	500	Right-handed alpha
Helix 122	AN5	H	509	516	Right-handed alpha
Helix 123	AN6	H	529	533	Right-handed 310
Helix 124	AN7	H	534	545	Right-handed alpha
Helix 125	AN8	H	567	573	Right-handed alpha
Helix 126	AN9	H	592	603	Right-handed alpha
Helix 127	AO1	H	632	645	Right-handed alpha
Helix 128	AO2	H	680	688	Right-handed alpha
Helix 129	AO3	H	690	700	Right-handed alpha

There are 43 sheets in PDB entry 6YYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	179	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	97	100	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	135	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	124	127	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	137	138	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	141	149	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	181	182	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	189	196	anti-parallel
Strand 3	C	203	207	anti-parallel
Strand 4	C	213	215	anti-parallel
Strand 5	C	223	224	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	347	first strand
Strand 2	C	353	355	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	515	522	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	569	571	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	552	first strand
Strand 2	C	560	563	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	644	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	658	662	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	878	anti-parallel
Strand 4	C	883	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	908	anti-parallel
Strand 7	C	708	714	parallel
Strand 8	C	1014	1023	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	751	first strand
Strand 2	C	856	868	anti-parallel
Strand 3	C	835	845	anti-parallel
Strand 4	C	786	788	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	797	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	956	957	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	521	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1124	1128	first strand
Strand 2	D	10	14	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	317	318	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	256	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	633	637	parallel
Strand 3	D	661	665	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	898	first strand
Strand 2	D	959	961	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	902	903	first strand
Strand 2	D	909	910	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	928	929	first strand
Strand 2	D	935	937	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1082	first strand
Strand 2	D	1062	1068	anti-parallel
Strand 3	D	1052	1058	anti-parallel
Strand 4	D	1105	1106	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1170	anti-parallel
Strand 3	D	1203	1207	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	103	first strand
Strand 2	H	83	92	parallel
Strand 3	H	71	77	anti-parallel
Strand 4	H	123	131	anti-parallel
Strand 5	H	136	142	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	256	257	first strand
Strand 2	H	229	232	parallel
Strand 3	H	524	527	parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	624	627	first strand
Strand 2	H	702	710	parallel
Strand 3	H	673	679	parallel
Strand 4	H	653	654	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6YYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6YYS