Analysis of interatomic Contacts of Structural Units in PDB entry:
6YYT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YYT entry

There are 8 chains in PDB entry 6YYT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 31THR 929
B
 PHE 6ALA 191
C
 SER 1GLU 73
D
 PHE 6ALA 191
P
 C 5 G 18
Q
 C 5 G 18
T
 U 7 G 18
U
 C 5 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6YYT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 90Right-handed alpha
Helix 2
AA2
A
123 133Right-handed alpha
Helix 3
AA3
A
139 149Right-handed alpha
Helix 4
AA4
A
153 159Right-handed 310
Helix 5
AA5
A
170 198Right-handed alpha
Helix 6
AA6
A
206 210Right-handed 310
Helix 7
AA7
A
234 249Right-handed alpha
Helix 8
AA8
A
250 256Right-handed 310
Helix 9
AA9
A
275 287Right-handed alpha
Helix 10
AB1
A
297 301Right-handed 310
Helix 11
AB2
A
303 318Right-handed alpha
Helix 12
AB3
A
367 377Right-handed alpha
Helix 13
AB4
A
377 385Right-handed alpha
Helix 14
AB5
A
416 426Right-handed alpha
Helix 15
AB6
A
445 447Right-handed 310
Helix 16
AB7
A
448 454Right-handed alpha
Helix 17
AB8
A
455 459Right-handed 310
Helix 18
AB9
A
465 478Right-handed alpha
Helix 19
AC1
A
479 481Right-handed 310
Helix 20
AC2
A
489 493Right-handed 310
Helix 21
AC3
A
505 509Right-handed 310
Helix 22
AC4
A
511 519Right-handed alpha
Helix 23
AC5
A
520 532Right-handed alpha
Helix 24
AC6
A
561 581Right-handed alpha
Helix 25
AC7
A
596 606Right-handed alpha
Helix 26
AC8
A
621 626Right-handed alpha
Helix 27
AC9
A
627 640Right-handed alpha
Helix 28
AD1
A
647 662Right-handed alpha
Helix 29
AD2
A
687 709Right-handed alpha
Helix 30
AD3
A
717 733Right-handed alpha
Helix 31
AD4
A
738 752Right-handed alpha
Helix 32
AD5
A
768 773Right-handed alpha
Helix 33
AD6
A
778 789Right-handed alpha
Helix 34
AD7
A
833 843Right-handed alpha
Helix 35
AD8
A
847 852Right-handed alpha
Helix 36
AD9
A
854 867Right-handed alpha
Helix 37
AE1
A
868 872Right-handed 310
Helix 38
AE2
A
874 903Right-handed alpha
Helix 39
AE3
A
909 916Right-handed 310
Helix 40
AE4
A
917 923Right-handed alpha
Helix 41
AE5
A
924 926Right-handed 310
Helix 42
AE6
B
9 29Right-handed alpha
Helix 43
AE7
B
31 98Right-handed alpha
Helix 44
AE8
B
99 110Right-handed alpha
Helix 45
AE9
B
118 125Right-handed alpha
Helix 46
AF1
B
134 141Right-handed alpha
Helix 47
AF2
C
2 20Right-handed alpha
Helix 48
AF3
C
21 24Right-handed 310
Helix 49
AF4
C
25 41Right-handed alpha
Helix 50
AF5
C
44 62Right-handed alpha
Helix 51
AF6
C
67 73Right-handed alpha
Helix 52
AF7
D
9 29Right-handed alpha
Helix 53
AF8
D
31 82Right-handed alpha
Helix 54
AF9
D
83 99Right-handed alpha
Helix 55
AG1
D
100 113Right-handed alpha
Helix 56
AG2
D
134 141Right-handed alpha
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There are 7 sheets in PDB entry 6YYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
43 49anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
201 204anti-parallel
Strand 3
A
232 233parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
338 348anti-parallel
Strand 3
A
327 335anti-parallel
Strand 4
B
115 116anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 559first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
666 669parallel
Strand 4
A
672 675anti-parallel
Strand 5
A
397 400anti-parallel
Strand 6
A
386 390anti-parallel
Strand 7
B
127 132parallel
Strand 8
B
184 191anti-parallel
Strand 9
B
152 160anti-parallel
Strand 10
B
146 149anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 758first strand
Strand 2
A
761 767anti-parallel
Strand 3
A
612 616anti-parallel
Strand 4
A
800 802anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
816 821first strand
Strand 2
A
826 831anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
127 132first strand
Strand 2
D
184 190anti-parallel
Strand 3
D
152 160anti-parallel
Strand 4
D
146 149anti-parallel
Strand 5
D
142 143anti-parallel
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