Analysis of interatomic Contacts of Structural Units in PDB entry:
6YZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6YZV entry

There is 1 chain in PDB entry 6YZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1LYS 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6YZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
18 23Right-handed 310
Helix 3
AA3
A
124 126Right-handed 310
Helix 4
AA4
A
127 132Right-handed alpha
Helix 5
AA5
A
151 153Right-handed 310
Helix 6
AA6
A
154 161Right-handed alpha
Helix 7
AA7
A
162 165Right-handed 310
Helix 8
AA8
A
177 182Right-handed 310
Helix 9
AA9
A
216 224Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6YZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
106 107parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
254 255parallel
Strand 3
A
188 193anti-parallel
Strand 4
A
204 209anti-parallel
Strand 5
A
138 147parallel
Strand 6
A
114 122anti-parallel
Strand 7
A
86 95anti-parallel
Strand 8
A
64 68anti-parallel
Strand 9
A
54 59anti-parallel
Strand 10
A
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
76 79anti-parallel
Strand 3
A
86 95anti-parallel
Strand 4
A
114 122anti-parallel
Strand 5
A
138 147anti-parallel
Strand 6
A
213 215parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il