Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Z1M entry

There are 3 chains in PDB entry 6Z1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9LEU 450
B
 SER 8LEU 450
C
 LYS 7HIS 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6Z1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
38 45Right-handed alpha
Helix 3
AA3
A
50 54Right-handed 310
Helix 4
AA4
A
61 77Right-handed alpha
Helix 5
AA5
A
86 91Right-handed alpha
Helix 6
AA6
A
99 116Right-handed alpha
Helix 7
AA7
A
130 136Right-handed alpha
Helix 8
AA8
A
137 141Right-handed 310
Helix 9
AA9
A
142 160Right-handed alpha
Helix 10
AB1
A
171 181Right-handed alpha
Helix 11
AB2
A
191 217Right-handed alpha
Helix 12
AB3
A
237 256Right-handed alpha
Helix 13
AB4
A
263 279Right-handed alpha
Helix 14
AB5
A
287 293Right-handed alpha
Helix 15
AB6
A
335 351Right-handed alpha
Helix 16
AB7
A
374 394Right-handed alpha
Helix 17
AB8
A
411 415Right-handed 310
Helix 18
AB9
A
435 448Right-handed alpha
Helix 19
AC1
B
22 27Right-handed alpha
Helix 20
AC2
B
38 45Right-handed alpha
Helix 21
AC3
B
50 54Right-handed 310
Helix 22
AC4
B
61 77Right-handed alpha
Helix 23
AC5
B
86 91Right-handed alpha
Helix 24
AC6
B
99 116Right-handed alpha
Helix 25
AC7
B
130 136Right-handed alpha
Helix 26
AC8
B
137 140Right-handed 310
Helix 27
AC9
B
141 160Right-handed alpha
Helix 28
AD1
B
171 181Right-handed alpha
Helix 29
AD2
B
191 217Right-handed alpha
Helix 30
AD3
B
238 256Right-handed alpha
Helix 31
AD4
B
266 278Right-handed alpha
Helix 32
AD5
B
288 292Right-handed 310
Helix 33
AD6
B
336 351Right-handed alpha
Helix 34
AD7
B
374 394Right-handed alpha
Helix 35
AD8
B
411 418Right-handed 310
Helix 36
AD9
B
435 448Right-handed alpha
Helix 37
AE1
C
22 27Right-handed alpha
Helix 38
AE2
C
38 45Right-handed alpha
Helix 39
AE3
C
50 54Right-handed 310
Helix 40
AE4
C
61 77Right-handed alpha
Helix 41
AE5
C
86 91Right-handed alpha
Helix 42
AE6
C
99 116Right-handed alpha
Helix 43
AE7
C
130 135Right-handed alpha
Helix 44
AE8
C
136 141Right-handed 310
Helix 45
AE9
C
142 160Right-handed alpha
Helix 46
AF1
C
171 181Right-handed alpha
Helix 47
AF2
C
191 217Right-handed alpha
Helix 48
AF3
C
237 256Right-handed alpha
Helix 49
AF4
C
257 261Right-handed 310
Helix 50
AF5
C
263 277Right-handed alpha
Helix 51
AF6
C
287 294Right-handed alpha
Helix 52
AF7
C
335 351Right-handed alpha
Helix 53
AF8
C
374 394Right-handed alpha
Helix 54
AF9
C
411 415Right-handed 310
Helix 55
AG1
C
435 448Right-handed alpha
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There are 7 sheets in PDB entry 6Z1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
80 84parallel
Strand 3
A
119 125parallel
Strand 4
A
165 170parallel
Strand 5
A
221 226parallel
Strand 6
A
299 303parallel
Strand 7
A
354 359parallel
Strand 8
A
398 404parallel
Strand 9
A
16 20parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 425first strand
Strand 2
A
432 434anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
449 450anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
80 84parallel
Strand 3
B
119 125parallel
Strand 4
B
165 170parallel
Strand 5
B
221 226parallel
Strand 6
B
298 302parallel
Strand 7
B
354 359parallel
Strand 8
B
398 404parallel
Strand 9
B
16 20parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
423 426first strand
Strand 2
B
431 434anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 20first strand
Strand 2
C
80 84parallel
Strand 3
C
119 125parallel
Strand 4
C
165 170parallel
Strand 5
C
221 227parallel
Strand 6
C
298 303parallel
Strand 7
C
354 359parallel
Strand 8
C
398 404parallel
Strand 9
C
16 20parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
423 426first strand
Strand 2
C
431 434anti-parallel
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