Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z2F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z2F entry

There are 3 chains in PDB entry 6Z2F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	VAL 501
B	ILE 3	TYR 250
B	VAL 252	LEU 500

There are 47 helices in PDB entry 6Z2F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	13	Right-handed alpha
Helix 2	AA2	A	15	20	Right-handed 310
Helix 3	AA3	A	21	25	Right-handed 310
Helix 4	AA4	A	26	39	Right-handed alpha
Helix 5	AA5	A	41	53	Right-handed alpha
Helix 6	AA6	A	86	100	Right-handed alpha
Helix 7	AA7	A	121	125	Right-handed 310
Helix 8	AA8	A	134	155	Right-handed alpha
Helix 9	AA9	A	171	181	Right-handed alpha
Helix 10	AB1	A	182	186	Right-handed 310
Helix 11	AB2	A	187	189	Right-handed 310
Helix 12	AB3	A	222	224	Right-handed 310
Helix 13	AB4	A	225	233	Right-handed alpha
Helix 14	AB5	A	234	243	Right-handed alpha
Helix 15	AB6	A	261	272	Right-handed alpha
Helix 16	AB7	A	303	307	Right-handed 310
Helix 17	AB8	A	308	314	Right-handed alpha
Helix 18	AB9	A	335	344	Right-handed alpha
Helix 19	AC1	A	345	349	Right-handed 310
Helix 20	AC2	A	381	389	Right-handed 310
Helix 21	AC3	A	398	403	Right-handed alpha
Helix 22	AC4	A	417	436	Right-handed alpha
Helix 23	AC5	A	477	482	Right-handed alpha
Helix 24	AC6	B	4	14	Right-handed alpha
Helix 25	AC7	B	15	20	Right-handed 310
Helix 26	AC8	B	21	25	Right-handed 310
Helix 27	AC9	B	26	39	Right-handed alpha
Helix 28	AD1	B	41	56	Right-handed alpha
Helix 29	AD2	B	65	67	Right-handed 310
Helix 30	AD3	B	88	100	Right-handed alpha
Helix 31	AD4	B	113	117	Right-handed 310
Helix 32	AD5	B	121	125	Right-handed 310
Helix 33	AD6	B	134	155	Right-handed alpha
Helix 34	AD7	B	170	181	Right-handed alpha
Helix 35	AD8	B	182	186	Right-handed 310
Helix 36	AD9	B	187	189	Right-handed 310
Helix 37	AE1	B	222	224	Right-handed 310
Helix 38	AE2	B	225	233	Right-handed alpha
Helix 39	AE3	B	234	243	Right-handed alpha
Helix 40	AE4	B	261	271	Right-handed alpha
Helix 41	AE5	B	308	314	Right-handed alpha
Helix 42	AE6	B	335	344	Right-handed alpha
Helix 43	AE7	B	345	349	Right-handed 310
Helix 44	AE8	B	381	389	Right-handed 310
Helix 45	AE9	B	398	403	Right-handed alpha
Helix 46	AF1	B	417	436	Right-handed alpha
Helix 47	AF2	B	477	482	Right-handed alpha

There are 15 sheets in PDB entry 6Z2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	195	first strand
Strand 2	A	162	166	parallel
Strand 3	A	103	108	parallel
Strand 4	A	246	251	parallel
Strand 5	A	325	334	anti-parallel
Strand 6	A	275	281	anti-parallel
Strand 7	A	392	396	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	218	220	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	215	216	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	299	302	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	375	379	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	361	first strand
Strand 2	A	367	368	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	485	486	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	466	first strand
Strand 2	A	490	493	parallel
Strand 3	A	496	499	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	291	295	anti-parallel
Strand 3	B	298	302	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	195	first strand
Strand 2	B	162	166	parallel
Strand 3	B	103	110	parallel
Strand 4	B	246	251	parallel
Strand 5	B	325	334	anti-parallel
Strand 6	B	275	281	anti-parallel
Strand 7	B	392	397	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	218	220	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	375	379	anti-parallel
Strand 3	B	352	356	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	215	216	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	440	first strand
Strand 2	B	485	486	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	466	first strand
Strand 2	B	490	493	parallel
Strand 3	B	496	499	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z2F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z2F