Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Z38 entry

There is 1 chain in PDB entry 6Z38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4PHE 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6Z38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
26 31Right-handed 310
Helix 3
AA3
A
33 40Right-handed 310
Helix 4
AA4
A
106 110Right-handed 310
Helix 5
AA5
A
163 172Right-handed alpha
Helix 6
AA6
A
178 184Right-handed alpha
Helix 7
AA7
A
187 190Right-handed 310
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There are 5 sheets in PDB entry 6Z38. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 103first strand
Strand 2
A
121 129anti-parallel
Strand 3
A
142 158anti-parallel
Strand 4
A
208 223anti-parallel
Strand 5
A
226 233anti-parallel
Strand 6
A
272 280anti-parallel
Strand 7
A
286 296anti-parallel
Strand 8
A
325 336anti-parallel
Strand 9
A
342 352anti-parallel
Strand 10
A
370 378anti-parallel
Strand 11
A
383 392anti-parallel
Strand 12
A
415 424anti-parallel
Strand 13
A
44 55anti-parallel
Strand 14
A
72 84anti-parallel
Strand 15
A
87 93anti-parallel
Strand 16
A
131 137anti-parallel
Strand 17
A
143 149anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
67 69anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 162first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
248 250anti-parallel
Strand 4
A
256 258anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 245first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
303 309anti-parallel
Strand 4
A
315 320anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
411 413anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il