Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z42

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z42 entry

There are 4 chains in PDB entry 6Z42 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 2	ALA 341
B	THR 4	ALA 341
C	LYS 6	ILE 332
D	MET 5	ALA 341

There are 58 helices in PDB entry 6Z42. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	51	Right-handed alpha
Helix 2	AA2	A	99	104	Right-handed alpha
Helix 3	AA3	A	106	110	Right-handed 310
Helix 4	AA4	A	143	148	Right-handed alpha
Helix 5	AA5	A	149	151	Right-handed 310
Helix 6	AA6	A	152	163	Right-handed alpha
Helix 7	AA7	A	178	191	Right-handed alpha
Helix 8	AA8	A	201	212	Right-handed alpha
Helix 9	AA9	A	223	231	Right-handed alpha
Helix 10	AB1	A	244	254	Right-handed alpha
Helix 11	AB2	A	275	282	Right-handed alpha
Helix 12	AB3	A	292	305	Right-handed alpha
Helix 13	AB4	A	319	330	Right-handed alpha
Helix 14	AB5	B	42	51	Right-handed alpha
Helix 15	AB6	B	99	104	Right-handed alpha
Helix 16	AB7	B	105	110	Right-handed 310
Helix 17	AB8	B	133	135	Right-handed 310
Helix 18	AB9	B	143	148	Right-handed alpha
Helix 19	AC1	B	149	151	Right-handed 310
Helix 20	AC2	B	152	163	Right-handed alpha
Helix 21	AC3	B	178	191	Right-handed alpha
Helix 22	AC4	B	201	212	Right-handed alpha
Helix 23	AC5	B	223	231	Right-handed alpha
Helix 24	AC6	B	244	254	Right-handed alpha
Helix 25	AC7	B	275	282	Right-handed alpha
Helix 26	AC8	B	292	305	Right-handed alpha
Helix 27	AC9	B	316	318	Right-handed 310
Helix 28	AD1	B	319	330	Right-handed alpha
Helix 29	AD2	C	42	51	Right-handed alpha
Helix 30	AD3	C	99	104	Right-handed alpha
Helix 31	AD4	C	106	110	Right-handed 310
Helix 32	AD5	C	133	135	Right-handed 310
Helix 33	AD6	C	143	148	Right-handed alpha
Helix 34	AD7	C	149	151	Right-handed 310
Helix 35	AD8	C	152	163	Right-handed alpha
Helix 36	AD9	C	178	192	Right-handed alpha
Helix 37	AE1	C	202	212	Right-handed alpha
Helix 38	AE2	C	223	231	Right-handed alpha
Helix 39	AE3	C	244	254	Right-handed alpha
Helix 40	AE4	C	275	282	Right-handed alpha
Helix 41	AE5	C	292	305	Right-handed alpha
Helix 42	AE6	C	316	318	Right-handed 310
Helix 43	AE7	C	319	330	Right-handed alpha
Helix 44	AE8	D	42	51	Right-handed alpha
Helix 45	AE9	D	99	104	Right-handed alpha
Helix 46	AF1	D	106	110	Right-handed 310
Helix 47	AF2	D	133	135	Right-handed 310
Helix 48	AF3	D	143	148	Right-handed alpha
Helix 49	AF4	D	149	151	Right-handed 310
Helix 50	AF5	D	152	163	Right-handed alpha
Helix 51	AF6	D	178	191	Right-handed alpha
Helix 52	AF7	D	201	212	Right-handed alpha
Helix 53	AF8	D	223	231	Right-handed alpha
Helix 54	AF9	D	244	254	Right-handed alpha
Helix 55	AG1	D	275	282	Right-handed alpha
Helix 56	AG2	D	292	305	Right-handed alpha
Helix 57	AG3	D	316	318	Right-handed 310
Helix 58	AG4	D	319	330	Right-handed alpha

There are 19 sheets in PDB entry 6Z42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	9	first strand
Strand 2	A	18	22	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	31	40	anti-parallel
Strand 3	A	67	74	anti-parallel
Strand 4	A	86	89	anti-parallel
Strand 5	A	136	137	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	131	first strand
Strand 2	A	31	40	anti-parallel
Strand 3	A	335	339	anti-parallel
Strand 4	A	312	315	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	114	115	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	216	first strand
Strand 2	A	194	197	parallel
Strand 3	A	171	175	parallel
Strand 4	A	235	240	parallel
Strand 5	A	255	263	parallel
Strand 6	A	284	287	parallel
Strand 7	B	284	286	anti-parallel
Strand 8	B	255	263	parallel
Strand 9	B	235	240	parallel
Strand 10	B	171	175	parallel
Strand 11	B	194	197	parallel
Strand 12	B	215	216	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	274	first strand
Strand 2	B	270	274	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	9	first strand
Strand 2	B	18	22	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	131	first strand
Strand 2	B	31	36	anti-parallel
Strand 3	B	67	73	anti-parallel
Strand 4	B	86	89	anti-parallel
Strand 5	B	136	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	114	115	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	315	first strand
Strand 2	B	335	338	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	31	39	anti-parallel
Strand 3	C	67	74	anti-parallel
Strand 4	C	86	89	anti-parallel
Strand 5	C	136	137	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	114	115	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	194	197	parallel
Strand 3	C	171	175	parallel
Strand 4	C	235	240	parallel
Strand 5	C	255	263	parallel
Strand 6	C	284	287	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	274	first strand
Strand 2	D	270	274	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	9	first strand
Strand 2	D	18	21	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	31	39	anti-parallel
Strand 3	D	67	74	anti-parallel
Strand 4	D	86	89	anti-parallel
Strand 5	D	136	137	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	114	115	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	216	first strand
Strand 2	D	194	197	parallel
Strand 3	D	171	175	parallel
Strand 4	D	235	240	parallel
Strand 5	D	255	263	parallel
Strand 6	D	284	286	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	315	first strand
Strand 2	D	336	338	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z42

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z42