Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z48 entry

There are 8 chains in PDB entry 6Z48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLU 1	ILE 14
H	ILE 16	GLY 246
A	GLU 1	ILE 14
B	ILE 16	GLY 246
C	GLU 1	ASP 14
D	ILE 16	GLY 246
E	GLU 1	ASP 14
F	ILE 16	GLY 246

There are 35 helices in PDB entry 6Z48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	7	11	Right-handed 310
Helix 2	AA2	L	14	14	Right-handed alpha
Helix 3	AA3	H	55	58	Right-handed 310
Helix 4	AA4	H	60	60	Right-handed 310
Helix 5	AA5	H	60	62	Right-handed 310
Helix 6	AA6	H	125	130	Right-handed alpha
Helix 7	AA7	H	164	171	Right-handed alpha
Helix 8	AA8	H	185	186	Right-handed 310
Helix 9	AA9	H	234	246	Right-handed alpha
Helix 10	AB1	A	14	14	Right-handed alpha
Helix 11	AB2	B	55	58	Right-handed 310
Helix 12	AB3	B	60	60	Right-handed 310
Helix 13	AB4	B	60	62	Right-handed 310
Helix 14	AB5	B	125	130	Right-handed alpha
Helix 15	AB6	B	164	171	Right-handed alpha
Helix 16	AB7	B	185	186	Right-handed 310
Helix 17	AB8	B	234	246	Right-handed alpha
Helix 18	AB9	C	7	11	Right-handed 310
Helix 19	AC1	C	14	14	Right-handed alpha
Helix 20	AC2	D	55	59	Right-handed alpha
Helix 21	AC3	D	60	60	Right-handed 310
Helix 22	AC4	D	60	62	Right-handed 310
Helix 23	AC5	D	125	130	Right-handed alpha
Helix 24	AC6	D	164	171	Right-handed alpha
Helix 25	AC7	D	185	186	Right-handed 310
Helix 26	AC8	D	234	246	Right-handed alpha
Helix 27	AC9	E	7	11	Right-handed 310
Helix 28	AD1	E	14	14	Right-handed alpha
Helix 29	AD2	F	55	58	Right-handed 310
Helix 30	AD3	F	60	60	Right-handed 310
Helix 31	AD4	F	60	62	Right-handed 310
Helix 32	AD5	F	125	130	Right-handed alpha
Helix 33	AD6	F	164	171	Right-handed alpha
Helix 34	AD7	F	185	186	Right-handed 310
Helix 35	AD8	F	234	246	Right-handed alpha

There are 12 sheets in PDB entry 6Z48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	156	163	anti-parallel
Strand 3	H	180	183	anti-parallel
Strand 4	H	226	230	anti-parallel
Strand 5	H	207	216	anti-parallel
Strand 6	H	198	202	anti-parallel
Strand 7	H	135	140	anti-parallel
Strand 8	H	156	163	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	83	first strand
Strand 2	H	64	68	anti-parallel
Strand 3	H	30	35	anti-parallel
Strand 4	H	39	46	anti-parallel
Strand 5	H	51	54	anti-parallel
Strand 6	H	104	108	anti-parallel
Strand 7	H	85	90	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	60	first strand
Strand 2	H	60	60	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	135	140	anti-parallel
Strand 4	B	198	202	anti-parallel
Strand 5	B	207	216	anti-parallel
Strand 6	B	226	230	anti-parallel
Strand 7	B	180	183	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	64	68	anti-parallel
Strand 3	B	30	35	anti-parallel
Strand 4	B	39	46	anti-parallel
Strand 5	B	51	54	anti-parallel
Strand 6	B	104	108	anti-parallel
Strand 7	B	85	90	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	60	first strand
Strand 2	B	60	60	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	156	163	anti-parallel
Strand 3	D	180	183	anti-parallel
Strand 4	D	226	230	anti-parallel
Strand 5	D	207	216	anti-parallel
Strand 6	D	198	202	anti-parallel
Strand 7	D	135	140	anti-parallel
Strand 8	D	156	163	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	83	first strand
Strand 2	D	64	68	anti-parallel
Strand 3	D	30	35	anti-parallel
Strand 4	D	39	46	anti-parallel
Strand 5	D	51	54	anti-parallel
Strand 6	D	104	108	anti-parallel
Strand 7	D	85	90	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	60	first strand
Strand 2	D	60	60	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	156	161	anti-parallel
Strand 3	F	135	140	anti-parallel
Strand 4	F	198	202	anti-parallel
Strand 5	F	207	216	anti-parallel
Strand 6	F	226	230	anti-parallel
Strand 7	F	180	183	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	35	first strand
Strand 2	F	39	46	anti-parallel
Strand 3	F	51	54	anti-parallel
Strand 4	F	104	108	anti-parallel
Strand 5	F	81	90	anti-parallel
Strand 6	F	64	68	anti-parallel
Strand 7	F	30	35	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	60	first strand
Strand 2	F	60	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z48

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z48