Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z49 entry

There are 4 chains in PDB entry 6Z49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 239	PRO 498
B	MET 240	PRO 497
C	PRO 237	SER 499
D	PHE 239	PRO 498

There are 39 helices in PDB entry 6Z49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	266	278	Right-handed alpha
Helix 2	AA2	A	292	306	Right-handed alpha
Helix 3	AA3	A	318	331	Right-handed alpha
Helix 4	AA4	A	332	334	Right-handed 310
Helix 5	AA5	A	354	362	Right-handed alpha
Helix 6	AA6	A	375	383	Right-handed alpha
Helix 7	AA7	A	386	399	Right-handed alpha
Helix 8	AA8	A	402	419	Right-handed alpha
Helix 9	AA9	A	424	435	Right-handed alpha
Helix 10	AB1	A	465	469	Right-handed 310
Helix 11	AB2	B	266	278	Right-handed alpha
Helix 12	AB3	B	292	304	Right-handed alpha
Helix 13	AB4	B	312	333	Right-handed alpha
Helix 14	AB5	B	352	354	Right-handed 310
Helix 15	AB6	B	355	362	Right-handed alpha
Helix 16	AB7	B	375	383	Right-handed alpha
Helix 17	AB8	B	386	400	Right-handed alpha
Helix 18	AB9	B	402	419	Right-handed alpha
Helix 19	AC1	B	424	435	Right-handed alpha
Helix 20	AC2	B	465	469	Right-handed 310
Helix 21	AC3	C	266	278	Right-handed alpha
Helix 22	AC4	C	292	306	Right-handed alpha
Helix 23	AC5	C	320	334	Right-handed alpha
Helix 24	AC6	C	352	361	Right-handed alpha
Helix 25	AC7	C	375	383	Right-handed alpha
Helix 26	AC8	C	386	399	Right-handed alpha
Helix 27	AC9	C	402	419	Right-handed alpha
Helix 28	AD1	C	424	435	Right-handed alpha
Helix 29	AD2	C	465	469	Right-handed 310
Helix 30	AD3	D	266	278	Right-handed alpha
Helix 31	AD4	D	292	305	Right-handed alpha
Helix 32	AD5	D	327	334	Right-handed alpha
Helix 33	AD6	D	352	354	Right-handed 310
Helix 34	AD7	D	355	362	Right-handed alpha
Helix 35	AD8	D	375	383	Right-handed alpha
Helix 36	AD9	D	386	400	Right-handed alpha
Helix 37	AE1	D	402	419	Right-handed alpha
Helix 38	AE2	D	424	435	Right-handed alpha
Helix 39	AE3	D	465	469	Right-handed 310

There are 9 sheets in PDB entry 6Z49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	258	first strand
Strand 2	A	242	250	anti-parallel
Strand 3	A	289	291	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	441	445	parallel
Strand 3	A	448	455	anti-parallel
Strand 4	A	458	462	anti-parallel
Strand 5	A	476	479	anti-parallel
Strand 6	A	488	489	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	258	first strand
Strand 2	B	242	250	anti-parallel
Strand 3	B	289	291	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	349	350	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	440	445	parallel
Strand 3	B	448	455	anti-parallel
Strand 4	B	458	462	anti-parallel
Strand 5	B	476	478	anti-parallel
Strand 6	B	488	489	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	258	first strand
Strand 2	C	242	250	anti-parallel
Strand 3	C	289	291	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	441	445	parallel
Strand 3	C	448	455	anti-parallel
Strand 4	C	458	462	anti-parallel
Strand 5	C	476	478	anti-parallel
Strand 6	C	488	489	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	258	first strand
Strand 2	D	242	250	anti-parallel
Strand 3	D	289	291	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	366	first strand
Strand 2	D	441	445	parallel
Strand 3	D	448	455	anti-parallel
Strand 4	D	458	462	anti-parallel
Strand 5	D	476	478	anti-parallel
Strand 6	D	488	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z49

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z49