Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z5R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z5R entry

There are 35 chains in PDB entry 6Z5R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TRP 2	ALA 46
D	GLY 4	TYR 52
E	TRP 2	ALA 46
F	GLY 4	TYR 52
G	TRP 2	ALA 46
I	ILE 6	TYR 52
J	TRP 2	ARG 45
K	ILE 6	TYR 52
N	TRP 2	ALA 46
O	SER 5	TYR 52
H	MET 1	THR 247
L	ALA 2	PRO 277
M	ALA 2	ARG 307
R	TRP 2	ALA 46
S	SER 5	TYR 52
T	TRP 2	LYS 48
U	ILE 6	TYR 52
V	TRP 2	ALA 46
X	ILE 6	TYR 52
P	TRP 2	ALA 46
Q	SER 5	TYR 52
Y	TRP 2	ALA 46
Z	SER 5	TYR 52
A	TRP 2	ALA 46
B	GLY 4	TYR 52
1	TRP 2	ALA 46
2	SER 5	TYR 52
3	TRP 2	ALA 46
4	SER 5	TYR 52
5	TRP 2	ALA 46
6	ASP 3	TYR 52
7	TRP 2	ALA 46
8	GLY 4	TYR 52
9	TRP 2	ALA 46
0	GLY 4	TYR 52

There are 89 helices in PDB entry 6Z5R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1	7	Right-handed 310
Helix 2	AA2	C	9	35	Right-handed alpha
Helix 3	AA3	D	10	43	Right-handed alpha
Helix 4	AA4	E	1	7	Right-handed 310
Helix 5	AA5	E	9	35	Right-handed alpha
Helix 6	AA6	F	10	43	Right-handed alpha
Helix 7	AA7	G	1	7	Right-handed 310
Helix 8	AA8	G	9	34	Right-handed alpha
Helix 9	AA9	I	10	43	Right-handed alpha
Helix 10	AB1	J	3	8	Right-handed alpha
Helix 11	AB2	J	9	35	Right-handed alpha
Helix 12	AB3	K	10	43	Right-handed alpha
Helix 13	AB4	N	1	7	Right-handed 310
Helix 14	AB5	N	9	35	Right-handed alpha
Helix 15	AB6	O	10	43	Right-handed alpha
Helix 16	AB7	H	8	32	Right-handed alpha
Helix 17	AB8	H	75	79	Right-handed 310
Helix 18	AB9	H	101	106	Right-handed alpha
Helix 19	AC1	H	107	111	Right-handed 310
Helix 20	AC2	H	121	125	Right-handed 310
Helix 21	AC3	H	133	135	Right-handed 310
Helix 22	AC4	H	194	196	Right-handed 310
Helix 23	AC5	H	211	218	Right-handed 310
Helix 24	AC6	H	228	246	Right-handed alpha
Helix 25	AC7	L	7	11	Right-handed 310
Helix 26	AC8	L	32	56	Right-handed alpha
Helix 27	AC9	L	61	65	Right-handed 310
Helix 28	AD1	L	71	75	Right-handed 310
Helix 29	AD2	L	80	83	Right-handed 310
Helix 30	AD3	L	84	113	Right-handed alpha
Helix 31	AD4	L	116	134	Right-handed alpha
Helix 32	AD5	L	134	141	Right-handed alpha
Helix 33	AD6	L	142	146	Right-handed 310
Helix 34	AD7	L	152	164	Right-handed alpha
Helix 35	AD8	L	165	166	Right-handed 310
Helix 36	AD9	L	167	170	Right-handed 310
Helix 37	AE1	L	171	200	Right-handed alpha
Helix 38	AE2	L	209	221	Right-handed alpha
Helix 39	AE3	L	226	251	Right-handed alpha
Helix 40	AE4	L	266	271	Right-handed alpha
Helix 41	AE5	M	39	44	Right-handed alpha
Helix 42	AE6	M	54	78	Right-handed alpha
Helix 43	AE7	M	82	89	Right-handed alpha
Helix 44	AE8	M	99	103	Right-handed 310
Helix 45	AE9	M	108	111	Right-handed 310
Helix 46	AF1	M	112	139	Right-handed alpha
Helix 47	AF2	M	144	162	Right-handed alpha
Helix 48	AF3	M	162	169	Right-handed alpha
Helix 49	AF4	M	170	174	Right-handed 310
Helix 50	AF5	M	178	193	Right-handed alpha
Helix 51	AF6	M	195	198	Right-handed 310
Helix 52	AF7	M	199	226	Right-handed alpha
Helix 53	AF8	M	227	230	Right-handed 310
Helix 54	AF9	M	235	240	Right-handed alpha
Helix 55	AG1	M	242	257	Right-handed alpha
Helix 56	AG2	M	263	287	Right-handed alpha
Helix 57	AG3	M	293	301	Right-handed alpha
Helix 58	AG4	R	3	8	Right-handed alpha
Helix 59	AG5	R	9	35	Right-handed alpha
Helix 60	AG6	S	10	43	Right-handed alpha
Helix 61	AG7	T	1	7	Right-handed 310
Helix 62	AG8	T	9	35	Right-handed alpha
Helix 63	AG9	U	11	43	Right-handed alpha
Helix 64	AH1	V	3	8	Right-handed alpha
Helix 65	AH2	V	9	35	Right-handed alpha
Helix 66	AH3	X	12	43	Right-handed alpha
Helix 67	AH4	P	1	7	Right-handed 310
Helix 68	AH5	P	9	34	Right-handed alpha
Helix 69	AH6	Q	10	43	Right-handed alpha
Helix 70	AH7	Y	9	35	Right-handed alpha
Helix 71	AH8	Z	11	43	Right-handed alpha
Helix 72	AH9	A	3	8	Right-handed alpha
Helix 73	AI1	A	9	34	Right-handed alpha
Helix 74	AI2	B	10	43	Right-handed alpha
Helix 75	AI3	1	3	8	Right-handed alpha
Helix 76	AI4	1	9	35	Right-handed alpha
Helix 77	AI5	2	10	43	Right-handed alpha
Helix 78	AI6	3	3	8	Right-handed alpha
Helix 79	AI7	3	9	35	Right-handed alpha
Helix 80	AI8	4	10	43	Right-handed alpha
Helix 81	AI9	5	1	7	Right-handed 310
Helix 82	AJ1	5	9	35	Right-handed alpha
Helix 83	AJ2	6	10	43	Right-handed alpha
Helix 84	AJ3	7	3	8	Right-handed alpha
Helix 85	AJ4	7	9	35	Right-handed alpha
Helix 86	AJ5	8	10	43	Right-handed alpha
Helix 87	AJ6	9	3	8	Right-handed alpha
Helix 88	AJ7	9	9	34	Right-handed alpha
Helix 89	AJ8	0	10	43	Right-handed alpha

There are 6 sheets in PDB entry 6Z5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	64	first strand
Strand 2	H	70	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	87	first strand
Strand 2	H	96	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	131	first strand
Strand 2	H	159	169	anti-parallel
Strand 3	H	174	182	anti-parallel
Strand 4	H	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	131	first strand
Strand 2	H	159	169	anti-parallel
Strand 3	H	151	153	anti-parallel
Strand 4	H	205	206	parallel
Strand 5	H	197	198	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	27	first strand
Strand 2	L	30	31	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	36	first strand
Strand 2	M	47	48	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z5R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z5R