Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z5U entry

There are 12 chains in PDB entry 6Z5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	GLY 256
B	THR 3	GLY 256
C	GLU 8	LEU 94
D	GLU 8	LEU 94
E	THR 5	THR 194
G	ARG 4	THR 194
H	SER 6	THR 194
I	LYS 2	THR 194
J	THR 5	THR 194
K	SER 11	GLN 263
L	SER 11	GLN 263
F	LYS 2	THR 194

There are 96 helices in PDB entry 6Z5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	30	Right-handed alpha
Helix 2	AA2	A	32	36	Right-handed 310
Helix 3	AA3	A	38	49	Right-handed alpha
Helix 4	AA4	A	52	79	Right-handed alpha
Helix 5	AA5	A	82	95	Right-handed alpha
Helix 6	AA6	A	96	123	Right-handed alpha
Helix 7	AA7	A	124	133	Right-handed alpha
Helix 8	AA8	A	141	172	Right-handed alpha
Helix 9	AA9	A	178	188	Right-handed alpha
Helix 10	AB1	A	194	220	Right-handed alpha
Helix 11	AB2	A	226	255	Right-handed alpha
Helix 12	AB3	B	4	31	Right-handed alpha
Helix 13	AB4	B	34	39	Right-handed 310
Helix 14	AB5	B	40	45	Right-handed alpha
Helix 15	AB6	B	49	51	Right-handed 310
Helix 16	AB7	B	52	76	Right-handed alpha
Helix 17	AB8	B	79	95	Right-handed alpha
Helix 18	AB9	B	96	109	Right-handed alpha
Helix 19	AC1	B	109	123	Right-handed alpha
Helix 20	AC2	B	126	133	Right-handed 310
Helix 21	AC3	B	135	140	Right-handed alpha
Helix 22	AC4	B	141	172	Right-handed alpha
Helix 23	AC5	B	178	190	Right-handed alpha
Helix 24	AC6	B	191	219	Right-handed alpha
Helix 25	AC7	B	225	255	Right-handed alpha
Helix 26	AC8	C	19	33	Right-handed alpha
Helix 27	AC9	C	42	46	Right-handed 310
Helix 28	AD1	C	50	62	Right-handed alpha
Helix 29	AD2	C	76	86	Right-handed alpha
Helix 30	AD3	D	16	18	Right-handed 310
Helix 31	AD4	D	19	33	Right-handed alpha
Helix 32	AD5	D	51	62	Right-handed alpha
Helix 33	AD6	D	64	69	Right-handed alpha
Helix 34	AD7	D	76	84	Right-handed alpha
Helix 35	AD8	E	6	33	Right-handed alpha
Helix 36	AD9	E	89	91	Right-handed 310
Helix 37	AE1	E	95	109	Right-handed alpha
Helix 38	AE2	E	112	117	Right-handed alpha
Helix 39	AE3	E	119	135	Right-handed alpha
Helix 40	AE4	E	184	191	Right-handed alpha
Helix 41	AE5	G	5	30	Right-handed alpha
Helix 42	AE6	G	88	91	Right-handed 310
Helix 43	AE7	G	94	113	Right-handed alpha
Helix 44	AE8	G	114	119	Right-handed alpha
Helix 45	AE9	G	120	134	Right-handed alpha
Helix 46	AF1	G	184	191	Right-handed alpha
Helix 47	AF2	H	7	33	Right-handed alpha
Helix 48	AF3	H	88	92	Right-handed 310
Helix 49	AF4	H	93	112	Right-handed alpha
Helix 50	AF5	H	112	117	Right-handed alpha
Helix 51	AF6	H	119	134	Right-handed alpha
Helix 52	AF7	H	184	191	Right-handed alpha
Helix 53	AF8	I	3	28	Right-handed alpha
Helix 54	AF9	I	29	31	Right-handed 310
Helix 55	AG1	I	87	92	Right-handed alpha
Helix 56	AG2	I	94	112	Right-handed alpha
Helix 57	AG3	I	114	118	Right-handed 310
Helix 58	AG4	I	119	133	Right-handed alpha
Helix 59	AG5	I	184	193	Right-handed alpha
Helix 60	AG6	J	6	31	Right-handed alpha
Helix 61	AG7	J	94	112	Right-handed alpha
Helix 62	AG8	J	113	116	Right-handed 310
Helix 63	AG9	J	120	134	Right-handed alpha
Helix 64	AH1	J	184	193	Right-handed alpha
Helix 65	AH2	K	50	59	Right-handed alpha
Helix 66	AH3	K	77	79	Right-handed 310
Helix 67	AH4	K	80	89	Right-handed alpha
Helix 68	AH5	K	105	112	Right-handed alpha
Helix 69	AH6	K	113	118	Right-handed alpha
Helix 70	AH7	K	121	136	Right-handed alpha
Helix 71	AH8	K	137	142	Right-handed 310
Helix 72	AH9	K	145	149	Right-handed 310
Helix 73	AI1	K	150	163	Right-handed alpha
Helix 74	AI2	K	175	178	Right-handed 310
Helix 75	AI3	K	180	198	Right-handed alpha
Helix 76	AI4	K	208	212	Right-handed 310
Helix 77	AI5	K	232	239	Right-handed alpha
Helix 78	AI6	K	241	250	Right-handed alpha
Helix 79	AI7	L	50	57	Right-handed alpha
Helix 80	AI8	L	80	88	Right-handed alpha
Helix 81	AI9	L	105	112	Right-handed alpha
Helix 82	AJ1	L	113	118	Right-handed alpha
Helix 83	AJ2	L	121	136	Right-handed alpha
Helix 84	AJ3	L	145	149	Right-handed 310
Helix 85	AJ4	L	150	164	Right-handed alpha
Helix 86	AJ5	L	180	198	Right-handed alpha
Helix 87	AJ6	L	208	216	Right-handed alpha
Helix 88	AJ7	L	232	237	Right-handed alpha
Helix 89	AJ8	L	241	248	Right-handed alpha
Helix 90	AJ9	F	3	28	Right-handed alpha
Helix 91	AK1	F	29	31	Right-handed 310
Helix 92	AK2	F	87	92	Right-handed alpha
Helix 93	AK3	F	94	112	Right-handed alpha
Helix 94	AK4	F	114	118	Right-handed 310
Helix 95	AK5	F	119	133	Right-handed alpha
Helix 96	AK6	F	184	193	Right-handed alpha

There are 17 sheets in PDB entry 6Z5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	71	73	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	157	160	anti-parallel
Strand 3	E	57	60	parallel
Strand 4	E	63	73	anti-parallel
Strand 5	E	80	87	anti-parallel
Strand 6	E	39	46	anti-parallel
Strand 7	E	175	176	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	141	first strand
Strand 2	E	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	150	first strand
Strand 2	G	157	162	anti-parallel
Strand 3	G	57	60	parallel
Strand 4	G	63	73	anti-parallel
Strand 5	G	80	86	anti-parallel
Strand 6	G	41	46	anti-parallel
Strand 7	G	175	176	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	141	first strand
Strand 2	G	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	176	first strand
Strand 2	H	40	46	parallel
Strand 3	H	80	86	anti-parallel
Strand 4	H	63	73	anti-parallel
Strand 5	H	57	60	anti-parallel
Strand 6	H	157	162	parallel
Strand 7	H	145	150	anti-parallel
Strand 8	H	179	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	137	141	first strand
Strand 2	H	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	40	46	first strand
Strand 2	I	80	86	anti-parallel
Strand 3	I	63	73	anti-parallel
Strand 4	I	57	60	anti-parallel
Strand 5	I	158	162	parallel
Strand 6	I	145	149	anti-parallel
Strand 7	I	179	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	141	first strand
Strand 2	I	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	145	150	first strand
Strand 2	J	157	162	anti-parallel
Strand 3	J	57	60	parallel
Strand 4	J	63	74	anti-parallel
Strand 5	J	79	86	anti-parallel
Strand 6	J	40	46	anti-parallel
Strand 7	J	175	176	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	137	141	first strand
Strand 2	J	169	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	25	35	first strand
Strand 2	K	13	22	anti-parallel
Strand 3	K	68	71	anti-parallel
Strand 4	K	74	75	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	91	94	first strand
Strand 2	K	169	173	parallel
Strand 3	K	201	206	parallel
Strand 4	K	40	44	parallel
Strand 5	K	218	223	parallel
Strand 6	K	226	231	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	35	first strand
Strand 2	L	13	22	anti-parallel
Strand 3	L	66	71	anti-parallel
Strand 4	L	74	75	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	91	94	first strand
Strand 2	L	169	173	parallel
Strand 3	L	201	205	parallel
Strand 4	L	40	44	parallel
Strand 5	L	218	223	parallel
Strand 6	L	226	231	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	46	first strand
Strand 2	F	80	86	anti-parallel
Strand 3	F	63	73	anti-parallel
Strand 4	F	57	60	anti-parallel
Strand 5	F	158	162	parallel
Strand 6	F	145	149	anti-parallel
Strand 7	F	179	180	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	141	first strand
Strand 2	F	169	171	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z5U