Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z88 entry

There are 8 chains in PDB entry 6Z88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 58	ARG 249
B	SER 60	ARG 249
C	PRO 58	ARG 249
D	SER 60	ARG 249
E	ASP 63	ARG 249
F	GLU 62	ARG 249
G	GLU 62	ARG 249
H	ARG 59	HIS 153

There are 79 helices in PDB entry 6Z88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	61	82	Right-handed alpha
Helix 2	2	A	94	105	Right-handed alpha
Helix 3	3	A	107	110	Right-handed 310
Helix 4	4	A	165	176	Right-handed alpha
Helix 5	5	A	182	197	Right-handed alpha
Helix 6	6	A	232	236	Right-handed 310
Helix 7	7	A	238	247	Right-handed alpha
Helix 8	8	B	61	81	Right-handed alpha
Helix 9	9	B	89	91	Right-handed 310
Helix 10	10	B	94	105	Right-handed alpha
Helix 11	11	B	107	109	Right-handed 310
Helix 12	12	B	113	115	Right-handed 310
Helix 13	13	B	165	176	Right-handed alpha
Helix 14	14	B	182	197	Right-handed alpha
Helix 15	15	B	232	236	Right-handed 310
Helix 16	16	B	238	247	Right-handed alpha
Helix 17	17	C	61	82	Right-handed alpha
Helix 18	18	C	89	91	Right-handed 310
Helix 19	19	C	94	105	Right-handed alpha
Helix 20	20	C	107	109	Right-handed 310
Helix 21	21	C	165	176	Right-handed alpha
Helix 22	22	C	182	197	Right-handed alpha
Helix 23	23	C	232	236	Right-handed 310
Helix 24	24	C	238	247	Right-handed alpha
Helix 25	25	D	61	82	Right-handed alpha
Helix 26	26	D	89	91	Right-handed 310
Helix 27	27	D	94	109	Right-handed alpha
Helix 28	28	D	165	176	Right-handed alpha
Helix 29	29	D	182	197	Right-handed alpha
Helix 30	30	D	232	236	Right-handed 310
Helix 31	31	D	238	247	Right-handed alpha
Helix 32	32	E	65	82	Right-handed alpha
Helix 33	33	E	89	91	Right-handed 310
Helix 34	34	E	94	105	Right-handed alpha
Helix 35	35	E	107	110	Right-handed 310
Helix 36	36	E	165	176	Right-handed alpha
Helix 37	37	E	182	197	Right-handed alpha
Helix 38	38	E	232	236	Right-handed 310
Helix 39	39	E	238	247	Right-handed alpha
Helix 40	40	F	63	82	Right-handed alpha
Helix 41	41	F	89	91	Right-handed 310
Helix 42	42	F	94	105	Right-handed alpha
Helix 43	43	F	107	110	Right-handed 310
Helix 44	44	F	165	176	Right-handed alpha
Helix 45	45	F	182	197	Right-handed alpha
Helix 46	46	F	232	236	Right-handed 310
Helix 47	47	F	238	247	Right-handed alpha
Helix 48	48	G	63	82	Right-handed alpha
Helix 49	49	G	89	91	Right-handed 310
Helix 50	50	G	94	105	Right-handed alpha
Helix 51	51	G	107	109	Right-handed 310
Helix 52	52	G	165	176	Right-handed alpha
Helix 53	53	G	182	197	Right-handed alpha
Helix 54	54	G	232	236	Right-handed 310
Helix 55	55	G	238	247	Right-handed alpha
Helix 56	56	H	61	82	Right-handed alpha
Helix 57	57	H	89	91	Right-handed 310
Helix 58	58	H	94	105	Right-handed alpha
Helix 59	59	H	107	110	Right-handed 310
Helix 60	60	H	165	176	Right-handed alpha
Helix 61	61	H	182	197	Right-handed alpha
Helix 62	62	H	232	236	Right-handed 310
Helix 63	63	H	238	247	Right-handed alpha
Helix 64	64	I	69	82	Right-handed alpha
Helix 65	65	I	89	91	Right-handed 310
Helix 66	66	I	94	105	Right-handed alpha
Helix 67	67	I	107	110	Right-handed 310
Helix 68	68	I	165	176	Right-handed alpha
Helix 69	69	I	182	197	Right-handed alpha
Helix 70	70	I	232	236	Right-handed 310
Helix 71	71	I	238	247	Right-handed alpha
Helix 72	72	J	63	82	Right-handed 310
Helix 73	73	J	89	91	Right-handed 310
Helix 74	74	J	94	105	Right-handed alpha
Helix 75	75	J	107	110	Right-handed 310
Helix 76	76	J	165	176	Right-handed alpha
Helix 77	77	J	182	197	Right-handed alpha
Helix 78	78	J	232	236	Right-handed 310
Helix 79	79	J	238	247	Right-handed alpha

There are 20 sheets in PDB entry 6Z88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	148	157	anti-parallel
Strand 3	A	201	210	anti-parallel
Strand 4	A	225	232	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	141	first strand
Strand 2	A	146	152	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	149	157	anti-parallel
Strand 3	B	201	209	anti-parallel
Strand 4	B	225	232	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	147	152	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	201	209	anti-parallel
Strand 4	C	225	232	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	141	first strand
Strand 2	C	146	152	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	149	157	anti-parallel
Strand 3	D	201	209	anti-parallel
Strand 4	D	225	232	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	140	first strand
Strand 2	D	147	152	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	132	first strand
Strand 2	E	149	157	anti-parallel
Strand 3	E	201	209	anti-parallel
Strand 4	E	225	232	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	140	first strand
Strand 2	E	147	152	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	132	first strand
Strand 2	F	149	157	anti-parallel
Strand 3	F	201	209	anti-parallel
Strand 4	F	225	232	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	140	first strand
Strand 2	F	147	152	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	132	first strand
Strand 2	G	148	157	anti-parallel
Strand 3	G	201	210	anti-parallel
Strand 4	G	225	232	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	140	first strand
Strand 2	G	147	152	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	132	first strand
Strand 2	H	149	157	anti-parallel
Strand 3	H	201	209	anti-parallel
Strand 4	H	225	232	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	141	first strand
Strand 2	H	146	152	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	129	132	first strand
Strand 2	I	149	157	anti-parallel
Strand 3	I	201	209	anti-parallel
Strand 4	I	225	232	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	135	140	first strand
Strand 2	I	147	152	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	129	132	first strand
Strand 2	J	150	157	anti-parallel
Strand 3	J	201	208	anti-parallel
Strand 4	J	225	232	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	135	140	first strand
Strand 2	J	147	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z88

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z88