Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Z8A entry

There is 1 chain in PDB entry 6Z8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 144PHE 820
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6Z8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
173 175Right-handed 310
Helix 2
AA2
A
184 191Right-handed alpha
Helix 3
AA3
A
194 199Right-handed alpha
Helix 4
AA4
A
200 202Right-handed 310
Helix 5
AA5
A
252 254Right-handed 310
Helix 6
AA6
A
266 271Right-handed alpha
Helix 7
AA7
A
399 403Right-handed 310
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There are 6 sheets in PDB entry 6Z8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
170 171anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
256 263anti-parallel
Strand 3
A
277 283anti-parallel
Strand 4
A
232 234parallel
Strand 5
A
237 238anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 206first strand
Strand 2
A
220 221anti-parallel
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There are 24 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 525first strand
Strand 2
A
484 512anti-parallel
Strand 3
A
529 548anti-parallel
Strand 4
A
551 568anti-parallel
Strand 5
A
574 589anti-parallel
Strand 6
A
596 607anti-parallel
Strand 7
A
622 633anti-parallel
Strand 8
A
641 652anti-parallel
Strand 9
A
669 682anti-parallel
Strand 10
A
688 702anti-parallel
Strand 11
A
719 726anti-parallel
Strand 12
A
736 745anti-parallel
Strand 13
A
762 770anti-parallel
Strand 14
A
780 787anti-parallel
Strand 15
A
811 820anti-parallel
Strand 16
A
291 299anti-parallel
Strand 17
A
303 313anti-parallel
Strand 18
A
320 332anti-parallel
Strand 19
A
339 352anti-parallel
Strand 20
A
357 368anti-parallel
Strand 21
A
404 419anti-parallel
Strand 22
A
424 447anti-parallel
Strand 23
A
454 481anti-parallel
Strand 24
A
484 512anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 749first strand
Strand 2
A
757 758anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
795 798first strand
Strand 2
A
804 806anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il