Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z8E entry

There are 2 chains in PDB entry 6Z8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 44	GLY 549
B	GLU 41	LYS 552

There are 36 helices in PDB entry 6Z8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	53	Right-handed alpha
Helix 2	AA2	A	53	61	Right-handed alpha
Helix 3	AA3	A	79	85	Right-handed 310
Helix 4	AA4	A	115	130	Right-handed alpha
Helix 5	AA5	A	139	167	Right-handed alpha
Helix 6	AA6	A	178	185	Right-handed alpha
Helix 7	AA7	A	188	195	Right-handed alpha
Helix 8	AA8	A	195	211	Right-handed alpha
Helix 9	AA9	A	219	230	Right-handed alpha
Helix 10	AB1	A	277	289	Right-handed alpha
Helix 11	AB2	A	295	309	Right-handed alpha
Helix 12	AB3	A	310	314	Right-handed 310
Helix 13	AB4	A	331	340	Right-handed alpha
Helix 14	AB5	A	390	398	Right-handed 310
Helix 15	AB6	A	410	417	Right-handed alpha
Helix 16	AB7	A	480	495	Right-handed alpha
Helix 17	AB8	A	527	543	Right-handed alpha
Helix 18	AB9	B	48	53	Right-handed alpha
Helix 19	AC1	B	53	61	Right-handed alpha
Helix 20	AC2	B	79	85	Right-handed 310
Helix 21	AC3	B	115	130	Right-handed alpha
Helix 22	AC4	B	139	167	Right-handed alpha
Helix 23	AC5	B	178	185	Right-handed alpha
Helix 24	AC6	B	188	195	Right-handed alpha
Helix 25	AC7	B	195	210	Right-handed alpha
Helix 26	AC8	B	211	213	Right-handed 310
Helix 27	AC9	B	219	230	Right-handed alpha
Helix 28	AD1	B	277	289	Right-handed alpha
Helix 29	AD2	B	289	294	Right-handed alpha
Helix 30	AD3	B	295	310	Right-handed alpha
Helix 31	AD4	B	331	340	Right-handed alpha
Helix 32	AD5	B	370	374	Right-handed 310
Helix 33	AD6	B	390	398	Right-handed 310
Helix 34	AD7	B	410	418	Right-handed alpha
Helix 35	AD8	B	483	495	Right-handed alpha
Helix 36	AD9	B	527	543	Right-handed alpha

There are 12 sheets in PDB entry 6Z8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	92	93	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	243	248	anti-parallel
Strand 3	A	98	105	parallel
Strand 4	A	448	458	anti-parallel
Strand 5	A	466	471	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	404	first strand
Strand 2	A	522	525	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	427	first strand
Strand 2	A	440	442	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	477	first strand
Strand 2	A	503	507	parallel
Strand 3	A	512	517	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	92	93	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	329	first strand
Strand 2	B	232	234	parallel
Strand 3	B	243	248	anti-parallel
Strand 4	B	98	105	parallel
Strand 5	B	448	458	anti-parallel
Strand 6	B	466	471	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	256	first strand
Strand 2	B	262	268	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	404	first strand
Strand 2	B	522	526	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	427	first strand
Strand 2	B	440	442	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	477	first strand
Strand 2	B	503	507	parallel
Strand 3	B	512	517	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8E