Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Z8H entry

There are 2 chains in PDB entry 6Z8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 28THR 384
B
 ASN 28ASP 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6Z8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 76Right-handed alpha
Helix 2
AA2
A
77 130Right-handed alpha
Helix 3
AA3
A
148 150Right-handed 310
Helix 4
AA4
A
178 185Right-handed 310
Helix 5
AA5
A
235 240Right-handed alpha
Helix 6
AA6
A
259 274Right-handed alpha
Helix 7
AA7
A
286 292Right-handed alpha
Helix 8
AA8
A
293 305Right-handed alpha
Helix 9
AA9
A
312 316Right-handed 310
Helix 10
AB1
A
317 330Right-handed alpha
Helix 11
AB2
A
331 334Right-handed 310
Helix 12
AB3
A
339 346Right-handed alpha
Helix 13
AB4
A
367 384Right-handed alpha
Helix 14
AB5
B
33 76Right-handed alpha
Helix 15
AB6
B
77 130Right-handed alpha
Helix 16
AB7
B
148 150Right-handed 310
Helix 17
AB8
B
178 185Right-handed 310
Helix 18
AB9
B
204 208Right-handed 310
Helix 19
AC1
B
235 240Right-handed alpha
Helix 20
AC2
B
259 274Right-handed alpha
Helix 21
AC3
B
286 293Right-handed alpha
Helix 22
AC4
B
295 305Right-handed alpha
Helix 23
AC5
B
312 316Right-handed 310
Helix 24
AC6
B
317 330Right-handed alpha
Helix 25
AC7
B
331 334Right-handed 310
Helix 26
AC8
B
339 346Right-handed alpha
Helix 27
AC9
B
367 384Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6Z8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
221 229anti-parallel
Strand 4
A
194 202anti-parallel
Strand 5
A
247 253anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 351first strand
Strand 2
A
358 361anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
135 139anti-parallel
Strand 3
B
221 229anti-parallel
Strand 4
B
194 203anti-parallel
Strand 5
B
209 210anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
135 139anti-parallel
Strand 3
B
221 229anti-parallel
Strand 4
B
194 203anti-parallel
Strand 5
B
247 253anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 351first strand
Strand 2
B
358 361anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il