Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z8I entry

There are 2 chains in PDB entry 6Z8I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	ALA 553
B	GLY 210	THR 909

There are 41 helices in PDB entry 6Z8I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	23	Right-handed 310
Helix 2	AA2	A	24	39	Right-handed alpha
Helix 3	AA3	A	51	55	Right-handed 310
Helix 4	AA4	A	68	77	Right-handed alpha
Helix 5	AA5	A	84	109	Right-handed alpha
Helix 6	AA6	A	118	142	Right-handed alpha
Helix 7	AA7	A	153	160	Right-handed 310
Helix 8	AA8	A	166	185	Right-handed alpha
Helix 9	AA9	A	196	213	Right-handed alpha
Helix 10	AB1	A	226	238	Right-handed alpha
Helix 11	AB2	A	238	245	Right-handed alpha
Helix 12	AB3	A	252	262	Right-handed 310
Helix 13	AB4	A	285	292	Right-handed 310
Helix 14	AB5	A	293	297	Right-handed 310
Helix 15	AB6	A	305	312	Right-handed alpha
Helix 16	AB7	A	340	344	Right-handed alpha
Helix 17	AB8	A	407	422	Right-handed alpha
Helix 18	AB9	A	425	443	Right-handed alpha
Helix 19	AC1	A	449	454	Right-handed alpha
Helix 20	AC2	A	469	486	Right-handed alpha
Helix 21	AC3	A	490	498	Right-handed alpha
Helix 22	AC4	A	500	514	Right-handed alpha
Helix 23	AC5	A	515	522	Right-handed 310
Helix 24	AC6	A	535	542	Right-handed alpha
Helix 25	AC7	B	233	248	Right-handed alpha
Helix 26	AC8	B	251	255	Right-handed 310
Helix 27	AC9	B	294	300	Right-handed alpha
Helix 28	AD1	B	353	355	Right-handed 310
Helix 29	AD2	B	376	384	Right-handed alpha
Helix 30	AD3	B	409	418	Right-handed alpha
Helix 31	AD4	B	535	539	Right-handed 310
Helix 32	AD5	B	584	587	Right-handed 310
Helix 33	AD6	B	604	610	Right-handed 310
Helix 34	AD7	B	725	729	Right-handed 310
Helix 35	AD8	B	779	786	Right-handed alpha
Helix 36	AD9	B	815	821	Right-handed alpha
Helix 37	AE1	B	889	895	Right-handed alpha
Helix 38	AE2	B	908	914	Right-handed 310
Helix 39	AE3	B	939	941	Right-handed 310
Helix 40	AE4	B	961	966	Right-handed alpha
Helix 41	AE5	B	967	969	Right-handed 310

There are 14 sheets in PDB entry 6Z8I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	B	638	640	anti-parallel
Strand 3	B	674	677	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	301	304	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	402	406	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	336	337	anti-parallel
Strand 3	A	457	458	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	377	378	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	355	359	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	396	398	anti-parallel

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There are 24 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	984	986	first strand
Strand 2	B	948	959	anti-parallel
Strand 3	B	972	980	anti-parallel
Strand 4	B	1006	1015	anti-parallel
Strand 5	B	212	224	anti-parallel
Strand 6	B	303	316	anti-parallel
Strand 7	B	319	331	anti-parallel
Strand 8	B	338	352	anti-parallel
Strand 9	B	357	371	anti-parallel
Strand 10	B	422	435	anti-parallel
Strand 11	B	441	460	anti-parallel
Strand 12	B	475	498	anti-parallel
Strand 13	B	501	524	anti-parallel
Strand 14	B	543	564	anti-parallel
Strand 15	B	569	580	anti-parallel
Strand 16	B	589	600	anti-parallel
Strand 17	B	615	627	anti-parallel
Strand 18	B	686	699	anti-parallel
Strand 19	B	704	716	anti-parallel
Strand 20	B	740	755	anti-parallel
Strand 21	B	760	777	anti-parallel
Strand 22	B	859	869	anti-parallel
Strand 23	B	872	882	anti-parallel
Strand 24	B	948	959	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	265	first strand
Strand 2	B	271	278	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	468	469	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	734	737	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	850	853	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	812	first strand
Strand 2	B	833	835	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	885	887	first strand
Strand 2	B	943	945	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z8I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8I