Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z8K entry

There are 6 chains in PDB entry 6Z8K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	A 1	C 10
X	G 9	A 12
H	A 6	U 16
T	A 1	C 10
P	G 7	U 16
A	MET 1	MET 2251

There are 95 helices in PDB entry 6Z8K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	21	46	Right-handed alpha
Helix 3	AA3	A	54	63	Right-handed alpha
Helix 4	AA4	A	99	118	Right-handed alpha
Helix 5	AA5	A	144	149	Right-handed alpha
Helix 6	AA6	A	161	172	Right-handed alpha
Helix 7	AA7	A	176	182	Right-handed alpha
Helix 8	AA8	A	198	202	Right-handed 310
Helix 9	AA9	A	204	214	Right-handed alpha
Helix 10	AB1	A	215	227	Right-handed alpha
Helix 11	AB2	A	239	261	Right-handed alpha
Helix 12	AB3	A	273	292	Right-handed alpha
Helix 13	AB4	A	297	301	Right-handed 310
Helix 14	AB5	A	319	333	Right-handed alpha
Helix 15	AB6	A	340	351	Right-handed alpha
Helix 16	AB7	A	356	372	Right-handed alpha
Helix 17	AB8	A	407	418	Right-handed alpha
Helix 18	AB9	A	447	466	Right-handed alpha
Helix 19	AC1	A	475	489	Right-handed alpha
Helix 20	AC2	A	489	502	Right-handed alpha
Helix 21	AC3	A	502	522	Right-handed alpha
Helix 22	AC4	A	597	606	Right-handed alpha
Helix 23	AC5	A	606	620	Right-handed alpha
Helix 24	AC6	A	626	638	Right-handed alpha
Helix 25	AC7	A	642	661	Right-handed alpha
Helix 26	AC8	A	665	673	Right-handed alpha
Helix 27	AC9	A	680	700	Right-handed alpha
Helix 28	AD1	A	737	747	Right-handed alpha
Helix 29	AD2	A	748	752	Right-handed 310
Helix 30	AD3	A	758	780	Right-handed alpha
Helix 31	AD4	A	796	814	Right-handed alpha
Helix 32	AD5	A	816	825	Right-handed alpha
Helix 33	AD6	A	830	834	Right-handed 310
Helix 34	AD7	A	850	870	Right-handed alpha
Helix 35	AD8	A	893	899	Right-handed alpha
Helix 36	AD9	A	911	921	Right-handed alpha
Helix 37	AE1	A	928	940	Right-handed alpha
Helix 38	AE2	A	964	983	Right-handed alpha
Helix 39	AE3	A	996	1020	Right-handed alpha
Helix 40	AE4	A	1020	1028	Right-handed alpha
Helix 41	AE5	A	1042	1047	Right-handed alpha
Helix 42	AE6	A	1071	1079	Right-handed alpha
Helix 43	AE7	A	1084	1099	Right-handed alpha
Helix 44	AE8	A	1106	1115	Right-handed alpha
Helix 45	AE9	A	1123	1129	Right-handed alpha
Helix 46	AF1	A	1148	1173	Right-handed alpha
Helix 47	AF2	A	1201	1219	Right-handed alpha
Helix 48	AF3	A	1252	1258	Right-handed alpha
Helix 49	AF4	A	1259	1261	Right-handed 310
Helix 50	AF5	A	1269	1285	Right-handed alpha
Helix 51	AF6	A	1288	1307	Right-handed alpha
Helix 52	AF7	A	1316	1320	Right-handed 310
Helix 53	AF8	A	1325	1329	Right-handed 310
Helix 54	AF9	A	1330	1334	Right-handed 310
Helix 55	AG1	A	1340	1347	Right-handed alpha
Helix 56	AG2	A	1350	1365	Right-handed alpha
Helix 57	AG3	A	1373	1379	Right-handed alpha
Helix 58	AG4	A	1380	1384	Right-handed 310
Helix 59	AG5	A	1390	1403	Right-handed alpha
Helix 60	AG6	A	1441	1452	Right-handed alpha
Helix 61	AG7	A	1456	1467	Right-handed alpha
Helix 62	AG8	A	1468	1472	Right-handed 310
Helix 63	AG9	A	1477	1488	Right-handed alpha
Helix 64	AH1	A	1491	1499	Right-handed alpha
Helix 65	AH2	A	1502	1513	Right-handed alpha
Helix 66	AH3	A	1521	1526	Right-handed alpha
Helix 67	AH4	A	1548	1561	Right-handed alpha
Helix 68	AH5	A	1566	1578	Right-handed alpha
Helix 69	AH6	A	1581	1593	Right-handed alpha
Helix 70	AH7	A	1622	1631	Right-handed alpha
Helix 71	AH8	A	1645	1659	Right-handed alpha
Helix 72	AH9	A	1660	1677	Right-handed alpha
Helix 73	AI1	A	1681	1700	Right-handed alpha
Helix 74	AI2	A	1717	1729	Right-handed alpha
Helix 75	AI3	A	1760	1778	Right-handed alpha
Helix 76	AI4	A	1784	1793	Right-handed alpha
Helix 77	AI5	A	1802	1812	Right-handed alpha
Helix 78	AI6	A	1814	1817	Right-handed 310
Helix 79	AI7	A	1818	1823	Right-handed alpha
Helix 80	AI8	A	1829	1840	Right-handed alpha
Helix 81	AI9	A	1892	1904	Right-handed alpha
Helix 82	AJ1	A	1944	1955	Right-handed alpha
Helix 83	AJ2	A	1983	1991	Right-handed alpha
Helix 84	AJ3	A	2014	2021	Right-handed 310
Helix 85	AJ4	A	2033	2038	Right-handed alpha
Helix 86	AJ5	A	2047	2052	Right-handed alpha
Helix 87	AJ6	A	2054	2059	Right-handed alpha
Helix 88	AJ7	A	2069	2074	Right-handed alpha
Helix 89	AJ8	A	2109	2129	Right-handed alpha
Helix 90	AJ9	A	2138	2154	Right-handed alpha
Helix 91	AK1	A	2158	2175	Right-handed alpha
Helix 92	AK2	A	2177	2183	Right-handed alpha
Helix 93	AK3	A	2200	2210	Right-handed alpha
Helix 94	AK4	A	2218	2238	Right-handed alpha
Helix 95	AK5	A	2246	2251	Right-handed alpha

There are 19 sheets in PDB entry 6Z8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	84	first strand
Strand 2	A	87	94	anti-parallel
Strand 3	A	124	131	parallel
Strand 4	A	138	140	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	295	first strand
Strand 2	A	441	443	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	391	395	anti-parallel
Strand 3	A	398	400	anti-parallel
Strand 4	A	529	534	anti-parallel
Strand 5	A	540	544	anti-parallel
Strand 6	A	557	565	anti-parallel
Strand 7	A	586	591	anti-parallel
Strand 8	A	577	583	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	391	395	anti-parallel
Strand 3	A	398	400	anti-parallel
Strand 4	A	529	534	anti-parallel
Strand 5	A	540	544	anti-parallel
Strand 6	A	557	565	anti-parallel
Strand 7	A	594	596	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	710	first strand
Strand 2	A	2097	2099	parallel
Strand 3	A	2088	2089	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	727	728	first strand
Strand 2	A	735	736	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	786	first strand
Strand 2	A	794	795	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	842	846	first strand
Strand 2	A	906	910	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	963	first strand
Strand 2	A	944	949	anti-parallel
Strand 3	A	1101	1104	parallel
Strand 4	A	1136	1139	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1177	1184	first strand
Strand 2	A	1189	1197	anti-parallel
Strand 3	A	1051	1059	anti-parallel
Strand 4	A	1230	1232	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1236	1238	first strand
Strand 2	A	1241	1243	anti-parallel
Strand 3	A	1248	1249	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1519	1520	first strand
Strand 2	A	1546	1547	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1594	1595	first strand
Strand 2	A	1739	1740	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1606	1609	first strand
Strand 2	A	1708	1711	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1796	1797	first strand
Strand 2	A	1800	1801	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1862	1867	first strand
Strand 2	A	1870	1876	anti-parallel
Strand 3	A	1881	1888	anti-parallel
Strand 4	A	1968	1975	parallel
Strand 5	A	1925	1927	anti-parallel
Strand 6	A	1941	1943	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1930	1932	first strand
Strand 2	A	1936	1938	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2027	2028	first strand
Strand 2	A	2031	2032	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2083	2085	first strand
Strand 2	A	2101	2103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z8K

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8K