Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z8O entry

There are 4 chains in PDB entry 6Z8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 7	ALA 283
B	GLY 15	HIS 495
C	GLU 6	ALA 283
D	GLY 15	HIS 495

There are 83 helices in PDB entry 6Z8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	27	Right-handed alpha
Helix 2	AA2	A	32	40	Right-handed alpha
Helix 3	AA3	A	53	68	Right-handed alpha
Helix 4	AA4	A	83	87	Right-handed 310
Helix 5	AA5	A	101	109	Right-handed alpha
Helix 6	AA6	A	110	112	Right-handed 310
Helix 7	AA7	A	119	125	Right-handed alpha
Helix 8	AA8	A	126	130	Right-handed 310
Helix 9	AA9	A	139	146	Right-handed alpha
Helix 10	AB1	A	162	181	Right-handed alpha
Helix 11	AB2	A	181	192	Right-handed alpha
Helix 12	AB3	A	199	204	Right-handed alpha
Helix 13	AB4	A	207	211	Right-handed 310
Helix 14	AB5	A	213	220	Right-handed alpha
Helix 15	AB6	A	233	237	Right-handed 310
Helix 16	AB7	A	239	243	Right-handed 310
Helix 17	AB8	A	246	251	Right-handed alpha
Helix 18	AB9	A	258	263	Right-handed alpha
Helix 19	AC1	A	274	278	Right-handed 310
Helix 20	AC2	B	54	59	Right-handed alpha
Helix 21	AC3	B	63	65	Right-handed 310
Helix 22	AC4	B	66	71	Right-handed alpha
Helix 23	AC5	B	72	75	Right-handed 310
Helix 24	AC6	B	78	95	Right-handed alpha
Helix 25	AC7	B	99	125	Right-handed alpha
Helix 26	AC8	B	126	130	Right-handed 310
Helix 27	AC9	B	151	181	Right-handed alpha
Helix 28	AD1	B	199	220	Right-handed alpha
Helix 29	AD2	B	220	232	Right-handed alpha
Helix 30	AD3	B	233	238	Right-handed 310
Helix 31	AD4	B	276	278	Right-handed 310
Helix 32	AD5	B	290	294	Right-handed 310
Helix 33	AD6	B	297	301	Right-handed 310
Helix 34	AD7	B	329	338	Right-handed alpha
Helix 35	AD8	B	342	352	Right-handed alpha
Helix 36	AD9	B	359	362	Right-handed 310
Helix 37	AE1	B	363	369	Right-handed alpha
Helix 38	AE2	B	370	396	Right-handed alpha
Helix 39	AE3	B	443	449	Right-handed alpha
Helix 40	AE4	B	459	465	Right-handed alpha
Helix 41	AE5	B	476	486	Right-handed alpha
Helix 42	AE6	B	489	495	Right-handed alpha
Helix 43	AE7	C	19	27	Right-handed alpha
Helix 44	AE8	C	32	40	Right-handed alpha
Helix 45	AE9	C	53	68	Right-handed alpha
Helix 46	AF1	C	83	87	Right-handed 310
Helix 47	AF2	C	101	109	Right-handed alpha
Helix 48	AF3	C	110	112	Right-handed 310
Helix 49	AF4	C	119	125	Right-handed alpha
Helix 50	AF5	C	126	130	Right-handed 310
Helix 51	AF6	C	139	146	Right-handed alpha
Helix 52	AF7	C	162	192	Right-handed alpha
Helix 53	AF8	C	199	204	Right-handed alpha
Helix 54	AF9	C	207	211	Right-handed 310
Helix 55	AG1	C	213	220	Right-handed alpha
Helix 56	AG2	C	233	237	Right-handed 310
Helix 57	AG3	C	239	243	Right-handed 310
Helix 58	AG4	C	246	251	Right-handed alpha
Helix 59	AG5	C	258	263	Right-handed alpha
Helix 60	AG6	C	274	278	Right-handed 310
Helix 61	AG7	D	54	59	Right-handed alpha
Helix 62	AG8	D	63	65	Right-handed 310
Helix 63	AG9	D	66	71	Right-handed alpha
Helix 64	AH1	D	72	75	Right-handed 310
Helix 65	AH2	D	78	95	Right-handed alpha
Helix 66	AH3	D	99	125	Right-handed alpha
Helix 67	AH4	D	126	130	Right-handed 310
Helix 68	AH5	D	151	181	Right-handed alpha
Helix 69	AH6	D	199	220	Right-handed alpha
Helix 70	AH7	D	220	232	Right-handed alpha
Helix 71	AH8	D	233	238	Right-handed 310
Helix 72	AH9	D	276	278	Right-handed 310
Helix 73	AI1	D	290	294	Right-handed 310
Helix 74	AI2	D	297	301	Right-handed 310
Helix 75	AI3	D	329	338	Right-handed alpha
Helix 76	AI4	D	342	354	Right-handed alpha
Helix 77	AI5	D	360	363	Right-handed 310
Helix 78	AI6	D	364	369	Right-handed alpha
Helix 79	AI7	D	370	396	Right-handed alpha
Helix 80	AI8	D	443	449	Right-handed alpha
Helix 81	AI9	D	459	465	Right-handed alpha
Helix 82	AJ1	D	476	486	Right-handed alpha
Helix 83	AJ2	D	489	495	Right-handed alpha

There are 18 sheets in PDB entry 6Z8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	9	14	parallel
Strand 3	A	73	77	parallel
Strand 4	A	114	118	parallel
Strand 5	A	153	156	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	137	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	94	first strand
Strand 2	A	97	100	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	31	38	anti-parallel
Strand 3	B	41	49	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	193	194	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	265	268	anti-parallel
Strand 3	B	245	247	anti-parallel
Strand 4	B	327	328	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	260	262	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	283	first strand
Strand 2	B	318	321	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	420	first strand
Strand 2	B	423	432	anti-parallel
Strand 3	B	435	442	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	9	14	parallel
Strand 3	C	73	77	parallel
Strand 4	C	114	118	parallel
Strand 5	C	153	156	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	137	138	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	94	first strand
Strand 2	C	97	100	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	21	first strand
Strand 2	D	31	38	anti-parallel
Strand 3	D	41	49	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	193	194	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	273	first strand
Strand 2	D	265	267	anti-parallel
Strand 3	D	245	247	anti-parallel
Strand 4	D	327	328	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	252	first strand
Strand 2	D	260	262	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	283	first strand
Strand 2	D	318	321	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	420	first strand
Strand 2	D	423	432	anti-parallel
Strand 3	D	435	442	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z8O