Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z99

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z99 entry

There are 2 chains in PDB entry 6Z99 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 66	PHE 723
B	LEU 66	PHE 702

There are 14 helices in PDB entry 6Z99. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	103	Right-handed alpha
Helix 2	AA2	A	149	154	Right-handed 310
Helix 3	AA3	A	155	159	Right-handed 310
Helix 4	AA4	A	394	398	Right-handed 310
Helix 5	AA5	A	495	501	Right-handed alpha
Helix 6	AA6	A	511	516	Right-handed alpha
Helix 7	AA7	A	697	701	Right-handed 310
Helix 8	AA8	B	99	104	Right-handed alpha
Helix 9	AA9	B	149	153	Right-handed 310
Helix 10	AB1	B	155	159	Right-handed 310
Helix 11	AB2	B	394	398	Right-handed 310
Helix 12	AB3	B	495	501	Right-handed alpha
Helix 13	AB4	B	505	509	Right-handed 310
Helix 14	AB5	B	697	701	Right-handed 310

There are 14 sheets in PDB entry 6Z99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	84	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	130	134	parallel
Strand 5	A	137	138	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	119	122	anti-parallel
Strand 3	A	125	126	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	587	600	anti-parallel
Strand 3	A	562	582	anti-parallel
Strand 4	A	535	555	anti-parallel
Strand 5	A	645	646	anti-parallel

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There are 23 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	587	600	anti-parallel
Strand 3	A	614	622	anti-parallel
Strand 4	A	626	635	anti-parallel
Strand 5	A	659	669	anti-parallel
Strand 6	A	674	681	anti-parallel
Strand 7	A	714	722	anti-parallel
Strand 8	A	195	205	anti-parallel
Strand 9	A	209	219	anti-parallel
Strand 10	A	223	234	anti-parallel
Strand 11	A	249	260	anti-parallel
Strand 12	A	266	279	anti-parallel
Strand 13	A	287	303	anti-parallel
Strand 14	A	309	326	anti-parallel
Strand 15	A	344	362	anti-parallel
Strand 16	A	365	382	anti-parallel
Strand 17	A	401	418	anti-parallel
Strand 18	A	423	438	anti-parallel
Strand 19	A	460	475	anti-parallel
Strand 20	A	481	492	anti-parallel
Strand 21	A	519	531	anti-parallel
Strand 22	A	535	555	anti-parallel
Strand 23	A	645	646	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	244	245	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	392	393	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	445	first strand
Strand 2	A	450	453	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	180	185	anti-parallel
Strand 4	B	130	134	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	119	122	anti-parallel
Strand 3	B	125	126	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	606	first strand
Strand 2	B	587	600	anti-parallel
Strand 3	B	564	582	anti-parallel
Strand 4	B	535	553	anti-parallel
Strand 5	B	645	646	anti-parallel

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There are 23 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	606	first strand
Strand 2	B	587	600	anti-parallel
Strand 3	B	614	623	anti-parallel
Strand 4	B	626	635	anti-parallel
Strand 5	B	659	669	anti-parallel
Strand 6	B	674	681	anti-parallel
Strand 7	B	714	723	anti-parallel
Strand 8	B	195	205	anti-parallel
Strand 9	B	209	220	anti-parallel
Strand 10	B	223	234	anti-parallel
Strand 11	B	249	260	anti-parallel
Strand 12	B	266	279	anti-parallel
Strand 13	B	287	303	anti-parallel
Strand 14	B	309	326	anti-parallel
Strand 15	B	344	362	anti-parallel
Strand 16	B	365	382	anti-parallel
Strand 17	B	401	417	anti-parallel
Strand 18	B	423	438	anti-parallel
Strand 19	B	460	475	anti-parallel
Strand 20	B	481	492	anti-parallel
Strand 21	B	519	530	anti-parallel
Strand 22	B	535	553	anti-parallel
Strand 23	B	645	646	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	385	first strand
Strand 2	B	392	393	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	444	first strand
Strand 2	B	451	453	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	696	first strand
Strand 2	B	706	707	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z99

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z99