Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z9A entry

There are 2 chains in PDB entry 6Z9A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 1	TRP 552
B	ASP 96	TYR 807

There are 43 helices in PDB entry 6Z9A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	20	Right-handed 310
Helix 2	AA2	A	21	39	Right-handed alpha
Helix 3	AA3	A	48	53	Right-handed alpha
Helix 4	AA4	A	68	77	Right-handed alpha
Helix 5	AA5	A	84	109	Right-handed alpha
Helix 6	AA6	A	112	116	Right-handed 310
Helix 7	AA7	A	118	142	Right-handed alpha
Helix 8	AA8	A	153	158	Right-handed 310
Helix 9	AA9	A	166	185	Right-handed alpha
Helix 10	AB1	A	196	213	Right-handed alpha
Helix 11	AB2	A	226	236	Right-handed alpha
Helix 12	AB3	A	238	245	Right-handed alpha
Helix 13	AB4	A	252	258	Right-handed 310
Helix 14	AB5	A	285	291	Right-handed 310
Helix 15	AB6	A	293	297	Right-handed 310
Helix 16	AB7	A	305	312	Right-handed alpha
Helix 17	AB8	A	340	344	Right-handed alpha
Helix 18	AB9	A	407	422	Right-handed alpha
Helix 19	AC1	A	425	442	Right-handed alpha
Helix 20	AC2	A	449	455	Right-handed alpha
Helix 21	AC3	A	469	485	Right-handed alpha
Helix 22	AC4	A	491	499	Right-handed alpha
Helix 23	AC5	A	500	512	Right-handed alpha
Helix 24	AC6	A	516	522	Right-handed 310
Helix 25	AC7	A	535	542	Right-handed alpha
Helix 26	AC8	B	105	110	Right-handed alpha
Helix 27	AC9	B	111	113	Right-handed 310
Helix 28	AD1	B	116	122	Right-handed alpha
Helix 29	AD2	B	172	174	Right-handed 310
Helix 30	AD3	B	184	190	Right-handed alpha
Helix 31	AD4	B	235	248	Right-handed alpha
Helix 32	AD5	B	294	299	Right-handed alpha
Helix 33	AD6	B	376	384	Right-handed alpha
Helix 34	AD7	B	409	417	Right-handed alpha
Helix 35	AD8	B	535	539	Right-handed 310
Helix 36	AD9	B	604	608	Right-handed 310
Helix 37	AE1	B	700	703	Right-handed 310
Helix 38	AE2	B	779	785	Right-handed alpha
Helix 39	AE3	B	815	821	Right-handed alpha
Helix 40	AE4	B	890	895	Right-handed alpha
Helix 41	AE5	B	909	914	Right-handed 310
Helix 42	AE6	B	939	941	Right-handed 310
Helix 43	AE7	B	961	966	Right-handed alpha

There are 16 sheets in PDB entry 6Z9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	15	first strand
Strand 2	B	638	640	anti-parallel
Strand 3	B	674	675	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	301	304	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	402	406	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	336	337	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	346	first strand
Strand 2	A	377	378	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	355	359	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	392	first strand
Strand 2	A	396	398	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	176	182	anti-parallel
Strand 3	B	199	204	anti-parallel
Strand 4	B	156	159	parallel
Strand 5	B	162	164	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	141	144	anti-parallel

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There are 24 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	B	761	775	anti-parallel
Strand 3	B	860	869	anti-parallel
Strand 4	B	872	881	anti-parallel
Strand 5	B	948	959	anti-parallel
Strand 6	B	972	986	anti-parallel
Strand 7	B	1006	1015	anti-parallel
Strand 8	B	214	224	anti-parallel
Strand 9	B	303	315	anti-parallel
Strand 10	B	319	331	anti-parallel
Strand 11	B	338	352	anti-parallel
Strand 12	B	357	371	anti-parallel
Strand 13	B	422	438	anti-parallel
Strand 14	B	441	460	anti-parallel
Strand 15	B	475	496	anti-parallel
Strand 16	B	503	524	anti-parallel
Strand 17	B	543	564	anti-parallel
Strand 18	B	569	580	anti-parallel
Strand 19	B	590	600	anti-parallel
Strand 20	B	615	627	anti-parallel
Strand 21	B	686	698	anti-parallel
Strand 22	B	705	716	anti-parallel
Strand 23	B	741	751	anti-parallel
Strand 24	B	761	775	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	265	first strand
Strand 2	B	271	278	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	465	first strand
Strand 2	B	468	469	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	734	737	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	804	806	first strand
Strand 2	B	850	853	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	812	first strand
Strand 2	B	833	835	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	885	887	first strand
Strand 2	B	943	945	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z9A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9A