Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Z9K entry

There are 2 chains in PDB entry 6Z9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 300ILE 538
B
 MET 293ASN 541
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6Z9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
317 322Right-handed alpha
Helix 2
AA2
A
323 338Right-handed alpha
Helix 3
AA3
A
344 350Right-handed alpha
Helix 4
AA4
A
361 383Right-handed alpha
Helix 5
AA5
A
391 405Right-handed alpha
Helix 6
AA6
A
413 424Right-handed alpha
Helix 7
AA7
A
452 469Right-handed alpha
Helix 8
AA8
A
470 474Right-handed 310
Helix 9
AA9
A
475 482Right-handed alpha
Helix 10
AB1
A
510 514Right-handed 310
Helix 11
AB2
A
530 538Right-handed alpha
Helix 12
AB3
B
294 303Right-handed alpha
Helix 13
AB4
B
317 322Right-handed alpha
Helix 14
AB5
B
323 338Right-handed alpha
Helix 15
AB6
B
344 351Right-handed alpha
Helix 16
AB7
B
361 383Right-handed alpha
Helix 17
AB8
B
391 405Right-handed alpha
Helix 18
AB9
B
413 424Right-handed alpha
Helix 19
AC1
B
452 469Right-handed alpha
Helix 20
AC2
B
470 474Right-handed 310
Helix 21
AC3
B
475 482Right-handed alpha
Helix 22
AC4
B
510 514Right-handed 310
Helix 23
AC5
B
516 520Right-handed 310
Helix 24
AC6
B
530 541Right-handed alpha
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There are 6 sheets in PDB entry 6Z9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
449 451anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
524 525anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
503 509anti-parallel
Strand 3
A
488 494anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 356first strand
Strand 2
B
449 451anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 390first strand
Strand 2
B
524 525anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 440first strand
Strand 2
B
503 509anti-parallel
Strand 3
B
488 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il