Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Z9L entry

There are 3 chains in PDB entry 6Z9L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 55ARG 798
F
 ALA 9ALA 17
G
 ALA 10ALA 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6Z9L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 126Right-handed alpha
Helix 2
AA2
A
132 301Right-handed alpha
Helix 3
AA3
A
317 322Right-handed alpha
Helix 4
AA4
A
323 339Right-handed alpha
Helix 5
AA5
A
344 351Right-handed alpha
Helix 6
AA6
A
361 383Right-handed alpha
Helix 7
AA7
A
391 405Right-handed alpha
Helix 8
AA8
A
413 424Right-handed alpha
Helix 9
AA9
A
452 469Right-handed alpha
Helix 10
AB1
A
470 474Right-handed 310
Helix 11
AB2
A
475 483Right-handed alpha
Helix 12
AB3
A
510 514Right-handed 310
Helix 13
AB4
A
530 704Right-handed alpha
Helix 14
AB5
A
705 764Right-handed alpha
Helix 15
AB6
A
764 774Right-handed alpha
Helix 16
AB7
A
774 789Right-handed alpha
Helix 17
AB8
F
10 15Right-handed alpha
Helix 18
AB9
G
11 15Right-handed alpha
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There are 3 sheets in PDB entry 6Z9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
449 451anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
524 525anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
503 509anti-parallel
Strand 3
A
488 494anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il