Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6Z9M entry

There are 3 chains in PDB entry 6Z9M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 104	ILE 723
B	ILE 104	ILE 723
C	ILE 104	ILE 723

There are 31 helices in PDB entry 6Z9M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	193	199	Right-handed alpha
Helix 2	AA2	A	403	407	Right-handed 310
Helix 3	AA3	A	409	429	Right-handed alpha
Helix 4	AA4	A	463	473	Right-handed alpha
Helix 5	AA5	A	501	546	Right-handed alpha
Helix 6	AA6	A	546	555	Right-handed alpha
Helix 7	AA7	A	662	664	Right-handed 310
Helix 8	AA8	A	693	697	Right-handed 310
Helix 9	AA9	A	701	710	Right-handed alpha
Helix 10	AB1	A	711	716	Right-handed 310
Helix 11	AB2	B	193	199	Right-handed alpha
Helix 12	AB3	B	238	241	Right-handed 310
Helix 13	AB4	B	306	310	Right-handed 310
Helix 14	AB5	B	315	317	Right-handed 310
Helix 15	AB6	B	410	429	Right-handed alpha
Helix 16	AB7	B	463	473	Right-handed alpha
Helix 17	AB8	B	500	546	Right-handed alpha
Helix 18	AB9	B	546	555	Right-handed alpha
Helix 19	AC1	B	690	695	Right-handed alpha
Helix 20	AC2	B	701	712	Right-handed alpha
Helix 21	AC3	B	713	716	Right-handed 310
Helix 22	AC4	C	193	199	Right-handed alpha
Helix 23	AC5	C	411	429	Right-handed alpha
Helix 24	AC6	C	463	472	Right-handed alpha
Helix 25	AC7	C	473	475	Right-handed 310
Helix 26	AC8	C	501	546	Right-handed alpha
Helix 27	AC9	C	546	556	Right-handed alpha
Helix 28	AD1	C	577	581	Right-handed 310
Helix 29	AD2	C	690	695	Right-handed alpha
Helix 30	AD3	C	701	710	Right-handed alpha
Helix 31	AD4	C	711	713	Right-handed 310

There are 32 sheets in PDB entry 6Z9M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	436	first strand
Strand 2	A	449	457	anti-parallel
Strand 3	A	143	150	anti-parallel
Strand 4	A	375	380	anti-parallel
Strand 5	A	383	388	anti-parallel
Strand 6	A	393	397	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	279	first strand
Strand 2	A	158	175	anti-parallel
Strand 3	A	351	355	anti-parallel
Strand 4	A	342	346	anti-parallel
Strand 5	A	319	322	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	186	191	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	180	182	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	231	233	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	215	first strand
Strand 2	A	218	222	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	A	293	295	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	444	first strand
Strand 2	A	448	451	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	564	first strand
Strand 2	A	567	569	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	630	632	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	604	first strand
Strand 2	A	613	618	anti-parallel
Strand 3	A	622	624	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	643	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	654	660	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	152	first strand
Strand 2	A	366	372	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	622	624	parallel
Strand 3	B	613	618	anti-parallel
Strand 4	B	600	604	anti-parallel
Strand 5	B	581	583	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	454	first strand
Strand 2	B	145	152	anti-parallel
Strand 3	B	366	372	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	279	first strand
Strand 2	B	158	175	anti-parallel
Strand 3	B	180	191	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	208	first strand
Strand 2	B	231	233	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	215	first strand
Strand 2	B	218	222	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	288	first strand
Strand 2	B	294	296	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	342	345	anti-parallel
Strand 3	B	352	355	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	380	first strand
Strand 2	B	383	388	anti-parallel
Strand 3	B	393	397	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	563	first strand
Strand 2	B	568	570	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	643	first strand
Strand 2	B	646	651	anti-parallel
Strand 3	B	655	660	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	444	first strand
Strand 2	C	448	454	anti-parallel
Strand 3	C	143	150	anti-parallel
Strand 4	C	375	379	anti-parallel
Strand 5	C	384	388	anti-parallel
Strand 6	C	393	397	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	279	first strand
Strand 2	C	158	164	anti-parallel
Strand 3	C	351	355	anti-parallel
Strand 4	C	342	346	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	165	173	anti-parallel
Strand 3	C	264	270	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	180	182	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	215	first strand
Strand 2	C	218	222	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	564	first strand
Strand 2	C	567	572	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	604	first strand
Strand 2	C	613	616	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	643	first strand
Strand 2	C	646	651	anti-parallel
Strand 3	C	658	660	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	151	first strand
Strand 2	C	367	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6Z9M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6Z9M